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From: Ben Woodcroft <donttrustben@gmail.com>
To: guix-devel@gnu.org
Subject: [PATCH 19/22] gnu: Add exonerate.
Date: Wed, 27 Jul 2016 22:54:20 +1000	[thread overview]
Message-ID: <bad9befd01d59dee6ed1068a8322648404d3891c.1469622379.git.donttrustben@gmail.com> (raw)
In-Reply-To: <20160727125423.7768-1-donttrustben@gmail.com>
In-Reply-To: <d3453a89a3858e7455e46040f96146f52b9c24aa.1469622378.git.donttrustben@gmail.com>

* gnu/packages/bioinformatics.scm (exonerate): New variable.
---
 gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ea2240..14ac57f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -51,6 +51,7 @@
   #:use-module (gnu packages gawk)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages gd)
+  #:use-module (gnu packages glib)
   #:use-module (gnu packages groff)
   #:use-module (gnu packages image)
   #:use-module (gnu packages java)
@@ -1917,6 +1918,34 @@ in structured XML format.  This can eliminate the need for writing custom
 software to answer ad hoc questions.")
     (license license:public-domain)))
 
+(define-public exonerate
+  (package
+    (name "exonerate")
+    (version "2.2.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri
+        (string-append
+         "http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/"
+         "exonerate-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1zz5dxhpkrv5k892kcjp3wqsw5ml54qg88lmi2gk5yl82c5p58hf"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (inputs
+     `(("glib" ,glib)))
+    (home-page
+     "https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate")
+    (synopsis "Generic tool for biological sequence alignment")
+    (description
+     "Exonerate is a generic tool for pairwise sequence comparison.  It allows
+the alignment of sequences using a many alignment models, either exhaustive
+dynamic programming or a variety of heuristics.")
+    (license license:gpl3)))
+
 (define-public express
   (package
     (name "express")
-- 
2.9.1

  parent reply	other threads:[~2016-07-27 12:55 UTC|newest]

Thread overview: 29+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2016-07-27 12:54 PATCH [0/22]: Add roary Ben Woodcroft
2016-07-27 12:54 ` [PATCH 01/22] gnu: parallel: Use full paths for executables Ben Woodcroft
2016-07-27 12:54   ` [PATCH 02/22] gnu: Add perl-xml-writer Ben Woodcroft
2016-07-27 12:54   ` [PATCH 03/22] gnu: Add perl-parse-yapp Ben Woodcroft
2016-07-27 12:54   ` [PATCH 04/22] gnu: Add perl-graph Ben Woodcroft
2016-07-27 12:54   ` [PATCH 05/22] gnu: Add perl-graph-readwrite Ben Woodcroft
2016-07-27 12:54   ` [PATCH 06/22] gnu: Add perl-log-log4perl Ben Woodcroft
2016-07-27 12:54   ` [PATCH 07/22] gnu: Add perl-file-slurper Ben Woodcroft
2016-07-27 12:54   ` [PATCH 08/22] gnu: Add perl-file-path Ben Woodcroft
2016-07-27 12:54   ` [PATCH 09/22] gnu: Add perl-file-grep Ben Woodcroft
2016-07-27 12:54   ` [PATCH 10/22] gnu: Add perl-array-utils Ben Woodcroft
2016-07-27 12:54   ` [PATCH 11/22] gnu: Add perl-test-files Ben Woodcroft
2016-07-27 12:54   ` [PATCH 12/22] gnu: Add perl-env-path Ben Woodcroft
2016-07-27 12:54   ` [PATCH 13/22] gnu: Add mcl Ben Woodcroft
2016-07-28 22:20     ` Leo Famulari
2016-07-27 12:54   ` [PATCH 14/22] gnu: Add bpp-core Ben Woodcroft
2016-07-27 12:54   ` [PATCH 15/22] gnu: Add bpp-seq Ben Woodcroft
2016-07-27 12:54   ` [PATCH 16/22] gnu: Add bpp-phyl Ben Woodcroft
2016-07-27 12:54   ` [PATCH 17/22] gnu: Add bpp-popgen Ben Woodcroft
2016-07-27 12:54   ` [PATCH 18/22] gnu: Add bppsuite Ben Woodcroft
2016-07-27 12:54   ` Ben Woodcroft [this message]
2016-07-28 22:22     ` [PATCH 19/22] gnu: Add exonerate Leo Famulari
2016-07-27 12:54   ` [PATCH 20/22] gnu: Add prank Ben Woodcroft
2016-07-27 12:54   ` [PATCH 21/22] gnu: Add raxml Ben Woodcroft
2016-07-27 12:54   ` [PATCH 22/22] gnu: Add roary Ben Woodcroft
2016-07-29 21:07     ` Leo Famulari
2016-07-28 22:31   ` [PATCH 01/22] gnu: parallel: Use full paths for executables Leo Famulari
2016-07-31 11:26 ` PATCH [0/22]: Add roary Ludovic Courtès
2016-08-08 12:16   ` Ben Woodcroft

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