From: Ben Woodcroft <donttrustben@gmail.com>
To: guix-devel@gnu.org
Subject: [PATCH 19/22] gnu: Add exonerate.
Date: Wed, 27 Jul 2016 22:54:20 +1000 [thread overview]
Message-ID: <bad9befd01d59dee6ed1068a8322648404d3891c.1469622379.git.donttrustben@gmail.com> (raw)
In-Reply-To: <20160727125423.7768-1-donttrustben@gmail.com>
In-Reply-To: <d3453a89a3858e7455e46040f96146f52b9c24aa.1469622378.git.donttrustben@gmail.com>
* gnu/packages/bioinformatics.scm (exonerate): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ea2240..14ac57f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -51,6 +51,7 @@
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
+ #:use-module (gnu packages glib)
#:use-module (gnu packages groff)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
@@ -1917,6 +1918,34 @@ in structured XML format. This can eliminate the need for writing custom
software to answer ad hoc questions.")
(license license:public-domain)))
+(define-public exonerate
+ (package
+ (name "exonerate")
+ (version "2.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append
+ "http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/"
+ "exonerate-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1zz5dxhpkrv5k892kcjp3wqsw5ml54qg88lmi2gk5yl82c5p58hf"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (inputs
+ `(("glib" ,glib)))
+ (home-page
+ "https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate")
+ (synopsis "Generic tool for biological sequence alignment")
+ (description
+ "Exonerate is a generic tool for pairwise sequence comparison. It allows
+the alignment of sequences using a many alignment models, either exhaustive
+dynamic programming or a variety of heuristics.")
+ (license license:gpl3)))
+
(define-public express
(package
(name "express")
--
2.9.1
next prev parent reply other threads:[~2016-07-27 12:55 UTC|newest]
Thread overview: 29+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-07-27 12:54 PATCH [0/22]: Add roary Ben Woodcroft
2016-07-27 12:54 ` [PATCH 01/22] gnu: parallel: Use full paths for executables Ben Woodcroft
2016-07-27 12:54 ` [PATCH 02/22] gnu: Add perl-xml-writer Ben Woodcroft
2016-07-27 12:54 ` [PATCH 03/22] gnu: Add perl-parse-yapp Ben Woodcroft
2016-07-27 12:54 ` [PATCH 04/22] gnu: Add perl-graph Ben Woodcroft
2016-07-27 12:54 ` [PATCH 05/22] gnu: Add perl-graph-readwrite Ben Woodcroft
2016-07-27 12:54 ` [PATCH 06/22] gnu: Add perl-log-log4perl Ben Woodcroft
2016-07-27 12:54 ` [PATCH 07/22] gnu: Add perl-file-slurper Ben Woodcroft
2016-07-27 12:54 ` [PATCH 08/22] gnu: Add perl-file-path Ben Woodcroft
2016-07-27 12:54 ` [PATCH 09/22] gnu: Add perl-file-grep Ben Woodcroft
2016-07-27 12:54 ` [PATCH 10/22] gnu: Add perl-array-utils Ben Woodcroft
2016-07-27 12:54 ` [PATCH 11/22] gnu: Add perl-test-files Ben Woodcroft
2016-07-27 12:54 ` [PATCH 12/22] gnu: Add perl-env-path Ben Woodcroft
2016-07-27 12:54 ` [PATCH 13/22] gnu: Add mcl Ben Woodcroft
2016-07-28 22:20 ` Leo Famulari
2016-07-27 12:54 ` [PATCH 14/22] gnu: Add bpp-core Ben Woodcroft
2016-07-27 12:54 ` [PATCH 15/22] gnu: Add bpp-seq Ben Woodcroft
2016-07-27 12:54 ` [PATCH 16/22] gnu: Add bpp-phyl Ben Woodcroft
2016-07-27 12:54 ` [PATCH 17/22] gnu: Add bpp-popgen Ben Woodcroft
2016-07-27 12:54 ` [PATCH 18/22] gnu: Add bppsuite Ben Woodcroft
2016-07-27 12:54 ` Ben Woodcroft [this message]
2016-07-28 22:22 ` [PATCH 19/22] gnu: Add exonerate Leo Famulari
2016-07-27 12:54 ` [PATCH 20/22] gnu: Add prank Ben Woodcroft
2016-07-27 12:54 ` [PATCH 21/22] gnu: Add raxml Ben Woodcroft
2016-07-27 12:54 ` [PATCH 22/22] gnu: Add roary Ben Woodcroft
2016-07-29 21:07 ` Leo Famulari
2016-07-28 22:31 ` [PATCH 01/22] gnu: parallel: Use full paths for executables Leo Famulari
2016-07-31 11:26 ` PATCH [0/22]: Add roary Ludovic Courtès
2016-08-08 12:16 ` Ben Woodcroft
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