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From: Jack Hill <jackhill@jackhill.us>
To: help-guix@gnu.org
Subject: Possible store corrumption
Date: Mon, 20 May 2019 16:38:37 -0400 (EDT)	[thread overview]
Message-ID: <alpine.DEB.2.20.1905201622290.5164@marsh.hcoop.net> (raw)

Hi Guix,

I've run guix gc --verify and received the following output:

$ guix gc --verify
reading the store...
checking path existence...
path `/gnu/store/k5qxpr9wswli6lskpp433mrk0ffvxa9q-gcc-6.5.0.tar.xz.drv' disappeared, but it still has valid referrers!
path `/gnu/store/k5vl8jfhjasarib3ya4zpimxb1qm5hbj-expat-2.2.6-guile-builder' disappeared, but it still has valid referrers!
path `/gnu/store/k8r5c77rqzi2jg70x4sk2bf79q9gqbxn-python-minimal-wr?pper-3.7.0.drv' disappeared, removing from database...
path `/gnu/store?k8jx7nmx92dpr65gg2l3avajq4ngwxs7-zlib-1.2.11-guile-builder' is not in the store
path `/gn?/store/k681wjynl5pkmi8bdbbxxvdn2ljvq854-gnome-disk-utility-3.28.3' is not in the store
path `26478' is not in the store

At firt I suspected filesystem corruption, but my store is on btrfs and 
btrfs scrub reports no errors:

$ sudo ./btrfs scrub status /
scrub status for ffa898fe-cd24-400e-8bc7-1865643a2d45
 	scrub started at Mon May 20 16:15:36 2019 and finished after 00:00:42
 	total bytes scrubbed: 19.20GiB with 0 errors

guix gc fails with:

$ guix gc
finding garbage collector roots...
deleting garbage...
guix gc: error: executing SQLite query: database or disk is full

What might be causing these symptoms and how might I resolve them?

Best,
Jack

             reply	other threads:[~2019-05-20 20:38 UTC|newest]

Thread overview: 3+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2019-05-20 20:38 Jack Hill [this message]
2019-05-21  8:39 ` Possible store corrumption Giovanni Biscuolo
2019-05-21 20:30   ` Jack Hill

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