From mboxrd@z Thu Jan 1 00:00:00 1970 From: Jack Hill Subject: Possible store corrumption Date: Mon, 20 May 2019 16:38:37 -0400 (EDT) Message-ID: Mime-Version: 1.0 Content-Type: text/plain; format=flowed; charset=US-ASCII Return-path: Received: from eggs.gnu.org ([209.51.188.92]:45546) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1hSp3P-0002Lq-3Y for help-guix@gnu.org; Mon, 20 May 2019 16:38:39 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hSp3O-0002pk-7O for help-guix@gnu.org; Mon, 20 May 2019 16:38:39 -0400 Received: from minsky.hcoop.net ([104.248.1.95]:43708) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1hSp3O-0002pJ-4J for help-guix@gnu.org; Mon, 20 May 2019 16:38:38 -0400 Received: from marsh.hcoop.net ([45.55.52.66]) by minsky.hcoop.net with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.89) (envelope-from ) id 1hSp3N-0007h9-5E for help-guix@gnu.org; Mon, 20 May 2019 16:38:37 -0400 List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: help-guix-bounces+gcggh-help-guix=m.gmane.org@gnu.org Sender: "Help-Guix" To: help-guix@gnu.org Hi Guix, I've run guix gc --verify and received the following output: $ guix gc --verify reading the store... checking path existence... path `/gnu/store/k5qxpr9wswli6lskpp433mrk0ffvxa9q-gcc-6.5.0.tar.xz.drv' disappeared, but it still has valid referrers! path `/gnu/store/k5vl8jfhjasarib3ya4zpimxb1qm5hbj-expat-2.2.6-guile-builder' disappeared, but it still has valid referrers! path `/gnu/store/k8r5c77rqzi2jg70x4sk2bf79q9gqbxn-python-minimal-wr?pper-3.7.0.drv' disappeared, removing from database... path `/gnu/store?k8jx7nmx92dpr65gg2l3avajq4ngwxs7-zlib-1.2.11-guile-builder' is not in the store path `/gn?/store/k681wjynl5pkmi8bdbbxxvdn2ljvq854-gnome-disk-utility-3.28.3' is not in the store path `26478' is not in the store At firt I suspected filesystem corruption, but my store is on btrfs and btrfs scrub reports no errors: $ sudo ./btrfs scrub status / scrub status for ffa898fe-cd24-400e-8bc7-1865643a2d45 scrub started at Mon May 20 16:15:36 2019 and finished after 00:00:42 total bytes scrubbed: 19.20GiB with 0 errors guix gc fails with: $ guix gc finding garbage collector roots... deleting garbage... guix gc: error: executing SQLite query: database or disk is full What might be causing these symptoms and how might I resolve them? Best, Jack