* [bug#56167] [PATCH] gnu: Add r-awst.
@ 2022-06-23 12:44 Mădălin Ionel Patrașcu
2022-10-31 20:37 ` bug#56167: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2022-06-23 12:44 UTC (permalink / raw)
To: 56167
* gnu/packages/bioconductor.scm (r-awst): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..fa9c728a44 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-awst
+ (package
+ (name "r-awst")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "awst" version))
+ (sha256
+ (base32
+ "0iw3zycmj95rmdx7f2w0j4yxkzd90y87lrzgdn9cyvvzi5avflav"))))
+ (properties `((upstream-name . "awst")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/drisso/awst")
+ (synopsis "Asymmetric within-sample transformation")
+ (description
+ "This package @dfn{awst} (Asymmetric Within-Sample Transformation) that
+regularizes RNA-seq read counts and reduces the effect of noise on the
+classification of samples. @code{AWST} comprises two main steps: standardization
+and smoothing. These steps transform gene expression data to reduce the noise
+of the lowly expressed features, which suffer from background effects and low
+signal-to-noise ratio, and the influence of the highly expressed features, which
+may be the result of amplification bias and other experimental artifacts.")
+ (license license:expat)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#56167: [PATCH] gnu: Add r-awst.
2022-06-23 12:44 [bug#56167] [PATCH] gnu: Add r-awst Mădălin Ionel Patrașcu
@ 2022-10-31 20:37 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2022-10-31 20:37 UTC (permalink / raw)
To: 56167-done
Applied, thanks!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
end of thread, other threads:[~2022-10-31 20:38 UTC | newest]
Thread overview: 2+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2022-06-23 12:44 [bug#56167] [PATCH] gnu: Add r-awst Mădălin Ionel Patrașcu
2022-10-31 20:37 ` bug#56167: " Ricardo Wurmus
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.