* [bug#57338] [PATCH] gnu: Add r-parathyroidse.
@ 2022-08-22 10:33 Mădălin Ionel Patrașcu
2022-08-23 9:53 ` bug#57338: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2022-08-22 10:33 UTC (permalink / raw)
To: 57338; +Cc: rekado
* gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7d2ca413e9..b4f880a080 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1541,6 +1541,30 @@ (define-public r-curatedtcgadata
across the entire multi-'omics experiment.")
(license license:artistic2.0)))
+(define-public r-parathyroidse
+ (package
+ (name "r-parathyroidse")
+ (version "1.34.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "parathyroidSE" version
+ 'experiment))
+ (sha256
+ (base32
+ "1h33x55c4gbzmh085skqif04wdcvjp2l9fm55qzwws27kwd30c16"))))
+ (properties `((upstream-name . "parathyroidSE")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-summarizedexperiment))
+ (home-page "https://bioconductor.org/packages/parathyroidSE")
+ (synopsis "RangedSummarizedExperiment for RNA-Seq of parathyroid tumors")
+ (description
+ "This package provides @code{RangedSummarizedExperiment} objects of read
+counts in genes and exonic parts for paired-end RNA-Seq data from experiments on
+primary cultures of parathyroid tumors. The sequencing was performed on tumor
+cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control).")
+ ;; The author(s) mentions only LGPL without any specific version.
+ (license license:lgpl2.1+)))
+
(define-public r-tcgabiolinksgui-data
(package
(name "r-tcgabiolinksgui-data")
base-commit: 706b3ef38b2f7ce9f05aa56e2eaaaf1c19e25f90
--
2.37.2
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#57338: [PATCH] gnu: Add r-parathyroidse.
2022-08-22 10:33 [bug#57338] [PATCH] gnu: Add r-parathyroidse Mădălin Ionel Patrașcu
@ 2022-08-23 9:53 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2022-08-23 9:53 UTC (permalink / raw)
To: Mădălin Ionel Patrașcu; +Cc: 57338-done
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
> * gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
Applied, thanks!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2022-08-22 10:33 [bug#57338] [PATCH] gnu: Add r-parathyroidse Mădălin Ionel Patrașcu
2022-08-23 9:53 ` bug#57338: " Ricardo Wurmus
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