* [bug#66064] [PATCH] gnu: python-plastid: Patch it for python 3.10.
@ 2023-09-18 3:39 Mădălin Ionel Patrașcu
2023-09-18 8:33 ` bug#66064: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2023-09-18 3:39 UTC (permalink / raw)
To: 66064; +Cc: rekado
* gnu/packages/bioinformatics.scm (python-plastid)[arguments]: Add
new phase patch-for-python-3.10.
---
gnu/packages/bioinformatics.scm | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c78f017a24..d7a9697c6e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3787,6 +3787,13 @@ (define-public python-plastid
"-xf" (assoc-ref inputs "test-data"))
;; This one requires bowtie-build
(delete-file "plastid/test/functional/test_crossmap.py")))
+ (add-after 'unpack 'patch-for-python-3.10
+ (lambda _
+ ;; Some classes were moved from collections to collections.abc
+ ;; in Python 3.10.
+ (substitute* "plastid/readers/bigbed.pyx"
+ ((", Iterable")
+ "\nfrom collections.abc import Iterable"))))
(add-before 'check 'build-extensions
(lambda _
;; Cython extensions have to be built before running the tests.
base-commit: 1d30ec935126f316187dfc26446347bc7de9868b
--
2.41.0
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#66064: [PATCH] gnu: python-plastid: Patch it for python 3.10.
2023-09-18 3:39 [bug#66064] [PATCH] gnu: python-plastid: Patch it for python 3.10 Mădălin Ionel Patrașcu
@ 2023-09-18 8:33 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2023-09-18 8:33 UTC (permalink / raw)
To: Mădălin Ionel Patrașcu; +Cc: 66064-done
Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
> * gnu/packages/bioinformatics.scm (python-plastid)[arguments]: Add
> new phase patch-for-python-3.10.
Applied, thanks!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2023-09-18 3:39 [bug#66064] [PATCH] gnu: python-plastid: Patch it for python 3.10 Mădălin Ionel Patrașcu
2023-09-18 8:33 ` bug#66064: " Ricardo Wurmus
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