* [bug#49541] [PATCH 0/2] Add python-pingouin
@ 2021-07-13 9:42 Arun Isaac
2021-07-13 9:49 ` [bug#49541] [PATCH 1/2] gnu: Add python-pandas-flavor Arun Isaac
2021-07-13 10:21 ` [bug#49541] [PATCH 0/2] " Bonface Munyoki K.
0 siblings, 2 replies; 5+ messages in thread
From: Arun Isaac @ 2021-07-13 9:42 UTC (permalink / raw)
To: 49541; +Cc: Bonface Munyoki K ., Arun Isaac
Hi,
This patchset adds python-pingouin.
Off list, Bonface expressed interest in reviewing these patches. So, CCing
them here.
Regards,
Arun
Arun Isaac (2):
gnu: Add python-pandas-flavor.
gnu: Add python-pingouin.
gnu/packages/python-science.scm | 102 ++++++++++++++++++++++++++++++++
1 file changed, 102 insertions(+)
--
2.32.0
^ permalink raw reply [flat|nested] 5+ messages in thread
* [bug#49541] [PATCH 1/2] gnu: Add python-pandas-flavor.
2021-07-13 9:42 [bug#49541] [PATCH 0/2] Add python-pingouin Arun Isaac
@ 2021-07-13 9:49 ` Arun Isaac
2021-07-13 9:49 ` [bug#49541] [PATCH 2/2] gnu: Add python-pingouin Arun Isaac
2021-07-13 10:21 ` [bug#49541] [PATCH 0/2] " Bonface Munyoki K.
1 sibling, 1 reply; 5+ messages in thread
From: Arun Isaac @ 2021-07-13 9:49 UTC (permalink / raw)
To: 49541; +Cc: Bonface Munyoki K ., Arun Isaac
* gnu/packages/python-science.scm (python-pandas-flavor): New variable.
---
gnu/packages/python-science.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index d2c4caac3a..1292781f2b 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -13,6 +13,7 @@
;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
;;; Copyright © 2021 Roel Janssen <roel@gnu.org>
;;; Copyright © 2021 Paul Garlick <pgarlick@tourbillion-technology.com>
+;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -733,3 +734,30 @@ dependencies.")
license:silofl1.1
license:cc0
license:public-domain))))
+
+(define-public python-pandas-flavor
+ (package
+ (name "python-pandas-flavor")
+ (version "0.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pandas_flavor" version))
+ (sha256
+ (base32
+ "12g4av8gpl6l83yza3h97j3f2jblqv69frlidrvdq8ny2rc6awbq"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-pandas" ,python-pandas)
+ ("python-xarray" ,python-xarray)))
+ (home-page "https://github.com/Zsailer/pandas_flavor")
+ (synopsis "Write your own flavor of Pandas")
+ (description "Pandas 0.23 added a simple API for registering accessors
+with Pandas objects. Pandas-flavor extends Pandas' extension API by
+
+@itemize
+@item adding support for registering methods as well
+@item making each of these functions backwards compatible with older versions
+of Pandas
+@end itemize")
+ (license license:expat)))
--
2.32.0
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [bug#49541] [PATCH 2/2] gnu: Add python-pingouin.
2021-07-13 9:49 ` [bug#49541] [PATCH 1/2] gnu: Add python-pandas-flavor Arun Isaac
@ 2021-07-13 9:49 ` Arun Isaac
0 siblings, 0 replies; 5+ messages in thread
From: Arun Isaac @ 2021-07-13 9:49 UTC (permalink / raw)
To: 49541; +Cc: Bonface Munyoki K ., Arun Isaac
* gnu/packages/python-science.scm (python-pingouin): New variable.
---
gnu/packages/python-science.scm | 74 +++++++++++++++++++++++++++++++++
1 file changed, 74 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 1292781f2b..6fce8d2319 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -37,6 +37,7 @@
#:use-module (gnu packages check)
#:use-module (gnu packages gcc)
#:use-module (gnu packages image-processing)
+ #:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
#:use-module (gnu packages perl)
@@ -48,6 +49,7 @@
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages simulation)
#:use-module (gnu packages sphinx)
+ #:use-module (gnu packages statistics)
#:use-module (gnu packages time)
#:use-module (gnu packages xdisorg)
#:use-module (gnu packages xml)
@@ -761,3 +763,75 @@ with Pandas objects. Pandas-flavor extends Pandas' extension API by
of Pandas
@end itemize")
(license license:expat)))
+
+(define-public python-pingouin
+ (package
+ (name "python-pingouin")
+ (version "0.3.12")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/raphaelvallat/pingouin")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1ap29x54kdr19vi8qxj9g6cz2r1q4f0z7dcf6g77zwav7hf7r61a"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; On loading, Pingouin uses the outdated package to check if a newer
+ ;; version is available on PyPI. This check adds an extra dependency
+ ;; and is irrelevant to Guix users. So, disable it.
+ (add-after 'unpack 'remove-outdated-check
+ (lambda _
+ (substitute* "setup.py"
+ (("'outdated',") ""))
+ (substitute* "pingouin/__init__.py"
+ (("^from outdated[^\n]*") "")
+ (("^warn_if_outdated[^\n]*") ""))))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "pytest")))))))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)
+ ("python-pytest-cov" ,python-pytest-cov)))
+ (propagated-inputs
+ `(("python-matplotlib" ,python-matplotlib)
+ ("python-mpmath" ,python-mpmath)
+ ("python-numpy" ,python-numpy)
+ ("python-pandas" ,python-pandas)
+ ("python-pandas-flavor" ,python-pandas-flavor)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("python-scipy" ,python-scipy)
+ ("python-seaborn" ,python-seaborn)
+ ("python-statsmodels" ,python-statsmodels)
+ ("python-tabulate" ,python-tabulate)))
+ (home-page "https://pingouin-stats.org/")
+ (synopsis "Statistical package for Python")
+ (description "Pingouin is a statistical package written in Python 3 and
+based mostly on Pandas and NumPy. Its features include
+
+@itemize
+@item ANOVAs: N-ways, repeated measures, mixed, ancova
+@item Pairwise post-hocs tests (parametric and non-parametric) and pairwise
+correlations
+@item Robust, partial, distance and repeated measures correlations
+@item Linear/logistic regression and mediation analysis
+@item Bayes Factors
+@item Multivariate tests
+@item Reliability and consistency
+@item Effect sizes and power analysis
+@item Parametric/bootstrapped confidence intervals around an effect size or a
+correlation coefficient
+@item Circular statistics
+@item Chi-squared tests
+@item Plotting: Bland-Altman plot, Q-Q plot, paired plot, robust correlation,
+and more
+@end itemize")
+ (license license:gpl3)))
+
--
2.32.0
^ permalink raw reply related [flat|nested] 5+ messages in thread
* [bug#49541] [PATCH 0/2] Add python-pingouin
2021-07-13 9:42 [bug#49541] [PATCH 0/2] Add python-pingouin Arun Isaac
2021-07-13 9:49 ` [bug#49541] [PATCH 1/2] gnu: Add python-pandas-flavor Arun Isaac
@ 2021-07-13 10:21 ` Bonface Munyoki K.
2021-07-13 11:46 ` bug#49541: " Arun Isaac
1 sibling, 1 reply; 5+ messages in thread
From: Bonface Munyoki K. @ 2021-07-13 10:21 UTC (permalink / raw)
To: Arun Isaac; +Cc: 49541
[-- Attachment #1: Type: text/plain, Size: 724 bytes --]
Ola o/
Arun Isaac <arunisaac@systemreboot.net> anaandika:
> Hi,
>
> This patchset adds python-pingouin.
>
> Off list, Bonface expressed interest in reviewing these patches. So, CCing
> them here.
>
Thanks for tagging me! LGTM; Both packages build
for me. Thanks for packaging these.
> Regards,
> Arun
>
> Arun Isaac (2):
> gnu: Add python-pandas-flavor.
> gnu: Add python-pingouin.
>
> gnu/packages/python-science.scm | 102 ++++++++++++++++++++++++++++++++
> 1 file changed, 102 insertions(+)
--
Bonface M. K. D4F09EB110177E03C28E2FE1F5BBAE1E0392253F
Free Software Activist
Humble GNU Emacs User | Bearer of scheme-y parens
Curator: <https://upbookclub.com> | Twitter: @BonfaceKilz
[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 865 bytes --]
^ permalink raw reply [flat|nested] 5+ messages in thread
* bug#49541: [PATCH 0/2] Add python-pingouin
2021-07-13 10:21 ` [bug#49541] [PATCH 0/2] " Bonface Munyoki K.
@ 2021-07-13 11:46 ` Arun Isaac
0 siblings, 0 replies; 5+ messages in thread
From: Arun Isaac @ 2021-07-13 11:46 UTC (permalink / raw)
To: Bonface Munyoki K.; +Cc: 49541-done
[-- Attachment #1: Type: text/plain, Size: 42 bytes --]
Thanks for the review. Pushed to master!
[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 524 bytes --]
^ permalink raw reply [flat|nested] 5+ messages in thread
end of thread, other threads:[~2021-07-13 11:47 UTC | newest]
Thread overview: 5+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2021-07-13 9:42 [bug#49541] [PATCH 0/2] Add python-pingouin Arun Isaac
2021-07-13 9:49 ` [bug#49541] [PATCH 1/2] gnu: Add python-pandas-flavor Arun Isaac
2021-07-13 9:49 ` [bug#49541] [PATCH 2/2] gnu: Add python-pingouin Arun Isaac
2021-07-13 10:21 ` [bug#49541] [PATCH 0/2] " Bonface Munyoki K.
2021-07-13 11:46 ` bug#49541: " Arun Isaac
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.