* [bug#68171] [PATCH 1/2] gnu: python-h5py: Enable tests.
2023-12-31 11:52 [bug#68171] [PATCH 0/2] Enable tests for python-h5py Troy Figiel
@ 2023-12-30 10:36 ` Troy Figiel
2023-12-30 11:06 ` [bug#68171] [PATCH 2/2] gnu: python-h5py: Reformat with guix style Troy Figiel
2024-01-09 9:09 ` bug#68171: [PATCH 0/2] Enable tests for python-h5py Mathieu Othacehe
2 siblings, 0 replies; 4+ messages in thread
From: Troy Figiel @ 2023-12-30 10:36 UTC (permalink / raw)
To: 68171
* gnu/packages/python-xyz.scm (python-h5py)[native-inputs]: Add python-ipython and python-pytest.
Change-Id: Ia1cae8bce802805c9d9b38a3bf515423f9b719b4
---
gnu/packages/python-xyz.scm | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2afce6c667..b5384b7c42 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2257,8 +2257,7 @@ (define-public python-h5py
"0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg"))))
(build-system python-build-system)
(arguments
- `(#:tests? #f ; no test target
- #:phases
+ '(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-hdf5-paths
(lambda* (#:key inputs #:allow-other-keys)
@@ -2268,7 +2267,7 @@ (define-public python-h5py
(inputs
(list hdf5-1.10))
(native-inputs
- (list python-cython python-pkgconfig pkg-config))
+ (list python-cython python-ipython python-pkgconfig python-pytest pkg-config))
(home-page "https://www.h5py.org/")
(synopsis "Read and write HDF5 files from Python")
(description
--
2.40.1
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [bug#68171] [PATCH 2/2] gnu: python-h5py: Reformat with guix style.
2023-12-31 11:52 [bug#68171] [PATCH 0/2] Enable tests for python-h5py Troy Figiel
2023-12-30 10:36 ` [bug#68171] [PATCH 1/2] gnu: python-h5py: Enable tests Troy Figiel
@ 2023-12-30 11:06 ` Troy Figiel
2024-01-09 9:09 ` bug#68171: [PATCH 0/2] Enable tests for python-h5py Mathieu Othacehe
2 siblings, 0 replies; 4+ messages in thread
From: Troy Figiel @ 2023-12-30 11:06 UTC (permalink / raw)
To: 68171
* gnu/packages/python-xyz.scm (python-h5py): Reformat with guix style.
Change-Id: I9c8fabcb8a438909ff70a2c98c9e01b3a82079f3
---
gnu/packages/python-xyz.scm | 29 +++++++++++++----------------
1 file changed, 13 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b5384b7c42..3015f0356f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2250,24 +2250,21 @@ (define-public python-h5py
(version "3.8.0")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "h5py" version))
- (sha256
- (base32
- "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg"))))
+ (method url-fetch)
+ (uri (pypi-uri "h5py" version))
+ (sha256
+ (base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg"))))
(build-system python-build-system)
(arguments
- '(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'fix-hdf5-paths
- (lambda* (#:key inputs #:allow-other-keys)
- (setenv "HDF5_DIR" (assoc-ref inputs "hdf5")))))))
- (propagated-inputs
- (list python-six python-numpy))
- (inputs
- (list hdf5-1.10))
- (native-inputs
- (list python-cython python-ipython python-pkgconfig python-pytest pkg-config))
+ '(#:phases (modify-phases %standard-phases
+ (add-after 'unpack 'fix-hdf5-paths
+ (lambda* (#:key inputs #:allow-other-keys)
+ (setenv "HDF5_DIR"
+ (assoc-ref inputs "hdf5")))))))
+ (propagated-inputs (list python-six python-numpy))
+ (inputs (list hdf5-1.10))
+ (native-inputs (list pkg-config python-cython python-ipython
+ python-pkgconfig python-pytest))
(home-page "https://www.h5py.org/")
(synopsis "Read and write HDF5 files from Python")
(description
--
2.40.1
^ permalink raw reply related [flat|nested] 4+ messages in thread
* [bug#68171] [PATCH 0/2] Enable tests for python-h5py
@ 2023-12-31 11:52 Troy Figiel
2023-12-30 10:36 ` [bug#68171] [PATCH 1/2] gnu: python-h5py: Enable tests Troy Figiel
` (2 more replies)
0 siblings, 3 replies; 4+ messages in thread
From: Troy Figiel @ 2023-12-31 11:52 UTC (permalink / raw)
To: 68171
While writing a different package definition, I noticed python-h5py does
not have any of its tests enabled. To make the tests pass, only two new
packages needed to be added to the native inputs.
A total of 130 dependent packages would need to be rebuilt. Although it
seems unlikely that only adding tests would break dependent builds, I
checked that locally all dependent packages that could be built before
this patch series, can still be built when these patches are applied (at
least for x86_64-linux).
Troy Figiel (2):
gnu: python-h5py: Enable tests.
gnu: python-h5py: Reformat with guix style.
gnu/packages/python-xyz.scm | 30 +++++++++++++-----------------
1 file changed, 13 insertions(+), 17 deletions(-)
base-commit: 2a242e86379ebddbdddf2927f26e5e27a98fc605
--
2.40.1
^ permalink raw reply [flat|nested] 4+ messages in thread
* bug#68171: [PATCH 0/2] Enable tests for python-h5py
2023-12-31 11:52 [bug#68171] [PATCH 0/2] Enable tests for python-h5py Troy Figiel
2023-12-30 10:36 ` [bug#68171] [PATCH 1/2] gnu: python-h5py: Enable tests Troy Figiel
2023-12-30 11:06 ` [bug#68171] [PATCH 2/2] gnu: python-h5py: Reformat with guix style Troy Figiel
@ 2024-01-09 9:09 ` Mathieu Othacehe
2 siblings, 0 replies; 4+ messages in thread
From: Mathieu Othacehe @ 2024-01-09 9:09 UTC (permalink / raw)
To: Troy Figiel; +Cc: 68171-done
> While writing a different package definition, I noticed python-h5py does
> not have any of its tests enabled. To make the tests pass, only two new
> packages needed to be added to the native inputs.
>
> A total of 130 dependent packages would need to be rebuilt. Although it
> seems unlikely that only adding tests would break dependent builds, I
> checked that locally all dependent packages that could be built before
> this patch series, can still be built when these patches are applied (at
> least for x86_64-linux).
Agreed. Applied, thanks!
Mathieu
^ permalink raw reply [flat|nested] 4+ messages in thread
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2023-12-31 11:52 [bug#68171] [PATCH 0/2] Enable tests for python-h5py Troy Figiel
2023-12-30 10:36 ` [bug#68171] [PATCH 1/2] gnu: python-h5py: Enable tests Troy Figiel
2023-12-30 11:06 ` [bug#68171] [PATCH 2/2] gnu: python-h5py: Reformat with guix style Troy Figiel
2024-01-09 9:09 ` bug#68171: [PATCH 0/2] Enable tests for python-h5py Mathieu Othacehe
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