* [bug#69134] [PATCH] gnu: Add python-ega-download-client.
@ 2024-02-14 20:27 nafkhamdc
2024-02-15 10:54 ` bug#69134: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: nafkhamdc @ 2024-02-14 20:27 UTC (permalink / raw)
To: 69134; +Cc: nafkhamdc
* gnu/packages/bioinformatics.scm (python-ega-download-client): New variable.
Change-Id: I3233774975989f912281ab2e6ec6ad3362cae18b
---
gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bcfe3c2656..863bf1ff26 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2525,6 +2525,43 @@ (define-public python-pybedtools
;; licensed lgpl2.1+
(license (list license:expat license:lgpl2.1+))))
+(define-public python-ega-download-client
+ (package
+ (name "python-ega-download-client")
+ (version "5.1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/EGA-archive/ega-download-client")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0k9rfq2yyvfxs5sq9lsm8krp9ddx4s18hv85ikf3b37zv24kpwjk"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags '(list "-k"
+ ;; These tests fail because they require internet access.
+ (string-append "not test_download.py"
+ " and not test_htsget.py"
+ " and not test_commands.py"))
+ #:phases '(modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "setup.py"
+ (("==")
+ ">=")))))))
+ (propagated-inputs (list python-htsget python-psutil python-requests
+ python-tqdm python-urllib3))
+ (native-inputs (list python-coverage python-pytest python-pyfakefs
+ python-responses))
+ (home-page "https://github.com/EGA-archive/ega-download-client")
+ (synopsis "EGA download client: pyEGA3")
+ (description
+ "PyEGA3 is a tool for viewing and downloading files from authorized EGA datasets.")
+ (license license:asl2.0)))
+
(define-public python-scdamandtools
(package
(name "python-scdamandtools")
base-commit: 2ba2875dbda4b080fcad4e6d672bb4104d59dd0c
--
2.34.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#69134: [PATCH] gnu: Add python-ega-download-client.
2024-02-14 20:27 [bug#69134] [PATCH] gnu: Add python-ega-download-client nafkhamdc
@ 2024-02-15 10:54 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2024-02-15 10:54 UTC (permalink / raw)
To: 69134-done; +Cc: Afkhami, Navid
Thanks for the patch. I pushed it to the master branch with commit
fb79e589957880c95bb4e8e57e2a5023c8a696d6.
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
end of thread, other threads:[~2024-02-15 11:02 UTC | newest]
Thread overview: 2+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2024-02-14 20:27 [bug#69134] [PATCH] gnu: Add python-ega-download-client nafkhamdc
2024-02-15 10:54 ` bug#69134: " Ricardo Wurmus
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.