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From: David Elsing <david.elsing@posteo.net>
To: 68790@debbugs.gnu.org
Cc: David Elsing <david.elsing@posteo.net>
Subject: [bug#68790] [PATCH 8/9] gnu: freesasa: Fix memerr tests.
Date: Sun, 28 Jan 2024 23:02:01 +0000	[thread overview]
Message-ID: <20240128230215.1389-8-david.elsing@posteo.net> (raw)
In-Reply-To: <20240128225919.795-2-david.elsing@posteo.net>

* gnu/packages/chemistry.scm (freesasa)[arguments]: Add
"CFLAGS=-fno-builtin-malloc" to #:configure-flags.
---
 gnu/packages/chemistry.scm | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm
index 5e19bdf182..98141737ac 100644
--- a/gnu/packages/chemistry.scm
+++ b/gnu/packages/chemistry.scm
@@ -708,7 +708,12 @@ (define-public freesasa
       #~(list "--enable-check"
               "--enable-parser-generator"
               "CXXFLAGS=-std=c++17"
-              "--enable-doxygen")
+              "--enable-doxygen"
+              ;; Some tests rely on replacing malloc with a wrapper which
+              ;; fails in a controlled way, but this does not work if the call
+              ;; is replaced. This was fixed upstream, remove once there is a
+              ;; new release.
+              "CFLAGS=-fno-builtin-malloc")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'remove-libc++-linking
-- 
2.41.0





  parent reply	other threads:[~2024-01-28 23:04 UTC|newest]

Thread overview: 11+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2024-01-28 22:59 [bug#68790] [PATCH 0/9] Update rdkit and its dependencies David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 1/9] gnu: tinydir: Update to 1.2.6 David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 2/9] gnu: fast-float: Update to 6.0.0 David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 3/9] gnu: gemmi: Update to 0.6.4 David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 4/9] gnu: maeparser: Update to 1.3.1 David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 5/9] gnu: coordgenlibs: Update to 3.0.2 David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 6/9] gnu: yaehmop: Update to 2023.03.1 David Elsing
2024-01-28 23:02 ` [bug#68790] [PATCH 7/9] gnu: avalon-toolkit: Update to 2.0.5a David Elsing
2024-01-28 23:02 ` David Elsing [this message]
2024-01-28 23:02 ` [bug#68790] [PATCH 9/9] gnu: rdkit: Update to 2023.09.4 David Elsing
2024-02-13 12:18 ` [bug#68790] [PATCH 0/9] Update rdkit and its dependencies Christopher Baines

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