From: David Elsing <david.elsing@posteo.net>
To: 68790@debbugs.gnu.org
Cc: David Elsing <david.elsing@posteo.net>
Subject: [bug#68790] [PATCH 3/9] gnu: gemmi: Update to 0.6.4.
Date: Sun, 28 Jan 2024 23:01:56 +0000 [thread overview]
Message-ID: <20240128230215.1389-3-david.elsing@posteo.net> (raw)
In-Reply-To: <20240128225919.795-2-david.elsing@posteo.net>
* gnu/packages/chemistry.scm (gemmi): Update to 0.6.4.
[arguments]: Adjust include/gemmi/sprintf.hpp -> src/sprintf.cpp.
(freesasa)[arguments]: Link to gemmi_cpp explicitly.
---
gnu/packages/chemistry.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm
index df96a2f5c1..5129470e1e 100644
--- a/gnu/packages/chemistry.scm
+++ b/gnu/packages/chemistry.scm
@@ -589,7 +589,7 @@ (define-public python-pymol
(define-public gemmi
(package
(name "gemmi")
- (version "0.5.7")
+ (version "0.6.4")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -598,7 +598,7 @@ (define-public gemmi
(file-name (git-file-name name version))
(sha256
(base32
- "00km5q726bslrw7xbfwb3f3mrsk19qbimfnl3hvr4wi1y3z8i18a"))
+ "0wciqqswc4p4v4kglfv36gnvyyimqn4lnywdzd0pgrjn443i860y"))
(patches
(search-patches "gemmi-fix-sajson-types.patch"
"gemmi-fix-pegtl-usage.patch"))
@@ -625,7 +625,7 @@ (define-public gemmi
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-includes
(lambda _
- (substitute* (list "include/gemmi/sprintf.hpp"
+ (substitute* (list "src/sprintf.cpp"
"include/gemmi/dirwalk.hpp"
"include/gemmi/cif.hpp"
"include/gemmi/json.hpp"
@@ -722,7 +722,7 @@ (define-public freesasa
(("libfreesasa\\.a") "libfreesasa.la")
(("freesasa_LDADD \\+= libfreesasa\\.la" prev)
(string-append prev "\nlibfreesasa_la_LIBADD"
- " = -ljson-c ${libxml2_LIBS}\n"))
+ " = -ljson-c -lgemmi_cpp ${libxml2_LIBS}\n"))
(("_a_SOURCES") "_la_SOURCES"))
(substitute* "configure.ac"
(("AC_PROG_INSTALL" inst)
--
2.41.0
next prev parent reply other threads:[~2024-01-28 23:03 UTC|newest]
Thread overview: 11+ messages / expand[flat|nested] mbox.gz Atom feed top
2024-01-28 22:59 [bug#68790] [PATCH 0/9] Update rdkit and its dependencies David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 1/9] gnu: tinydir: Update to 1.2.6 David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 2/9] gnu: fast-float: Update to 6.0.0 David Elsing
2024-01-28 23:01 ` David Elsing [this message]
2024-01-28 23:01 ` [bug#68790] [PATCH 4/9] gnu: maeparser: Update to 1.3.1 David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 5/9] gnu: coordgenlibs: Update to 3.0.2 David Elsing
2024-01-28 23:01 ` [bug#68790] [PATCH 6/9] gnu: yaehmop: Update to 2023.03.1 David Elsing
2024-01-28 23:02 ` [bug#68790] [PATCH 7/9] gnu: avalon-toolkit: Update to 2.0.5a David Elsing
2024-01-28 23:02 ` [bug#68790] [PATCH 8/9] gnu: freesasa: Fix memerr tests David Elsing
2024-01-28 23:02 ` [bug#68790] [PATCH 9/9] gnu: rdkit: Update to 2023.09.4 David Elsing
2024-02-13 12:18 ` [bug#68790] [PATCH 0/9] Update rdkit and its dependencies Christopher Baines
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