From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: <61933@debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Subject: [bug#61933] [PATCH vREVISION 9/9] gnu: Add r-seurat-utils.
Date: Fri, 3 Mar 2023 13:07:23 +0000 [thread overview]
Message-ID: <20230303130723.88484-9-navid.afkhami@mdc-berlin.de> (raw)
In-Reply-To: <20230303130723.88484-1-navid.afkhami@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (r-seurat-utils): New variable.
---
gnu/packages/bioinformatics.scm | 55 +++++++++++++++++++++++++++++++++
1 file changed, 55 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b179fcb61a..31dd2d856f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15955,6 +15955,61 @@ (define-public r-scopeloomr
files.")
(license license:expat))))
+(define-public r-seurat-utils
+ (let ((commit "0b6f5b548a49148cfbeaa654e8a618c0a020afa5")
+ (revision "1"))
+ (package
+ (name "r-seurat-utils")
+ (version (git-version "1.6.5" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/vertesy/Seurat.utils")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1mn64h375mkj6x4ix5493z32gqg96yc507j5jr0lx9g5wk1bf762"))))
+ (properties `((upstream-name . "Seurat.utils")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-codeandroll2
+ r-cowplot
+ r-dplyr
+ r-ggcorrplot
+ r-ggexpress
+ r-ggplot2
+ r-ggpubr
+ r-ggrepel
+ r-hgnchelper
+ r-htmlwidgets
+ r-markdownhelpers
+ r-markdownreports
+ r-matrix
+ r-matrixstats
+ r-princurve
+ r-r-utils
+ r-readr
+ r-readwriter
+ r-reshape2
+ r-scales
+ r-seurat
+ r-soupx
+ r-sparsematrixstats
+ r-stringendo
+ r-stringr
+ r-tibble
+ r-tictoc
+ r-vroom))
+ (home-page "https://github.com/vertesy/Seurat.utils")
+ (synopsis "Seurat.utils is a collection of utility functions for Seurat")
+ (description
+ "This is a collection of utility functions for Seurat v3.
+These Functions allow the automation and multiplexing of plotting,
+3D plotting, visualisation of statistics & QC, interaction with the
+Seurat object. Some functionalities require functions from
+CodeAndRoll and MarkdownReports libraries.")
+ (license license:gpl3))))
+
(define-public r-seuratwrappers
;; There are no releases or tags.
(let ((commit "d28512f804d5fe05e6d68900ca9221020d52cf1d")
--
2.34.1
next prev parent reply other threads:[~2023-03-03 13:08 UTC|newest]
Thread overview: 11+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-03-03 12:50 [bug#61933] [PATCH 0/9] *** A requested with 8 dependencies *** Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 1/9] gnu: Add r-stringendo Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 2/9] gnu: Add r-readwriter Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 3/9] gnu: Add r-codeandroll2 Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 4/9] gnu: Add r-markdownhelpers Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 5/9] gnu: Add r-markdownreports Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 6/9] gnu: Add r-ggexpress Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 7/9] gnu: Add r-tictoc Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 8/9] gnu: Add r-hgnchelper Navid Afkhami
2023-03-03 13:07 ` Navid Afkhami [this message]
2023-03-03 14:12 ` bug#61933: [PATCH 0/9] *** A requested with 8 dependencies *** Ricardo Wurmus
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