From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: <61933@debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Subject: [bug#61933] [PATCH vREVISION 8/9] gnu: Add r-hgnchelper.
Date: Fri, 3 Mar 2023 13:07:22 +0000 [thread overview]
Message-ID: <20230303130723.88484-8-navid.afkhami@mdc-berlin.de> (raw)
In-Reply-To: <20230303130723.88484-1-navid.afkhami@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (r-hgnchelper): New variable.
---
gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 42d0923ab1..b179fcb61a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9139,6 +9139,29 @@ (define-public r-archr
"This package is designed to streamline scATAC analyses in R.")
(license license:gpl2+))))
+(define-public r-hgnchelper
+ (package
+ (name "r-hgnchelper")
+ (version "0.8.1")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "HGNChelper" version))
+ (sha256
+ (base32
+ "0qwkk5658j4j6w2wgvxkp38cyvscjp93d3zc7gb97vcihqx0ngxa"))))
+ (properties `((upstream-name . "HGNChelper")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/waldronlab/HGNChelper")
+ (synopsis
+ "Identification and correction of invalid gene symbols for human and mouse")
+ (description
+ "Set of R functions for identifying and correcting HGNC human gene symbols.
+In addition, you can identify MGI mouse gene symbols, which have been converted
+to date format by Excel, withdrawn, or aliased. Also contains functions for
+reversibly converting between HGNC symbols and valid R names.")
+ (license license:gpl2+)))
+
(define-public r-icellnet
;; v1.0 tagged in 2020, last commit contains many fixes.
;; DESCRIPTION says Version: 0.0.0.9000.
--
2.34.1
next prev parent reply other threads:[~2023-03-03 13:08 UTC|newest]
Thread overview: 11+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-03-03 12:50 [bug#61933] [PATCH 0/9] *** A requested with 8 dependencies *** Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 1/9] gnu: Add r-stringendo Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 2/9] gnu: Add r-readwriter Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 3/9] gnu: Add r-codeandroll2 Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 4/9] gnu: Add r-markdownhelpers Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 5/9] gnu: Add r-markdownreports Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 6/9] gnu: Add r-ggexpress Navid Afkhami
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 7/9] gnu: Add r-tictoc Navid Afkhami
2023-03-03 13:07 ` Navid Afkhami [this message]
2023-03-03 13:07 ` [bug#61933] [PATCH vREVISION 9/9] gnu: Add r-seurat-utils Navid Afkhami
2023-03-03 14:12 ` bug#61933: [PATCH 0/9] *** A requested with 8 dependencies *** Ricardo Wurmus
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