all messages for Guix-related lists mirrored at yhetil.org
 help / color / mirror / code / Atom feed
* [bug#60785] [PATCH] gnu: Add r-maser.
@ 2023-01-13 15:07 Mădălin Ionel Patrașcu
  2023-01-14  7:18 ` bug#60785: " Ricardo Wurmus
  0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2023-01-13 15:07 UTC (permalink / raw)
  To: 60785; +Cc: rekado

* gnu/packages/bioconductor.scm (r-maser): New variable.
---
 gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c2fa26cb59..ca236bcf75 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6274,6 +6274,38 @@ (define-public r-makecdfenv
 package that automatically loads that environment.")
     (license license:gpl2+)))
 
+(define-public r-maser
+  (package
+    (name "r-maser")
+    (version "1.16.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "maser" version))
+              (sha256
+               (base32
+                "1zycx8s046g4d3w5qrn950bmi0nrnq1g7fvqji48mr6hmsyzplvv"))))
+    (properties `((upstream-name . "maser")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biocgenerics
+           r-data-table
+           r-dplyr
+           r-dt
+           r-genomeinfodb
+           r-genomicranges
+           r-ggplot2
+           r-gviz
+           r-iranges
+           r-reshape2
+           r-rtracklayer))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/DiogoVeiga/maser")
+    (synopsis "Mapping alternative splicing events to proteins")
+    (description
+     "This package provides functionalities for downstream analysis, annotation
+and visualizaton of alternative splicing events generated by rMATS.")
+    (license license:expat)))
+
 (define-public r-metaneighbor
   (package
     (name "r-metaneighbor")

base-commit: 789d73234d5b6bbd83bb054146d5bbd1d374d51a
-- 
2.38.1





^ permalink raw reply related	[flat|nested] 2+ messages in thread

* bug#60785: [PATCH] gnu: Add r-maser.
  2023-01-13 15:07 [bug#60785] [PATCH] gnu: Add r-maser Mădălin Ionel Patrașcu
@ 2023-01-14  7:18 ` Ricardo Wurmus
  0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2023-01-14  7:18 UTC (permalink / raw)
  To: Mădălin Ionel Patrașcu; +Cc: 60785-done


Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-maser): New variable.

Applied, thanks!

-- 
Ricardo




^ permalink raw reply	[flat|nested] 2+ messages in thread

end of thread, other threads:[~2023-01-14  7:19 UTC | newest]

Thread overview: 2+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2023-01-13 15:07 [bug#60785] [PATCH] gnu: Add r-maser Mădălin Ionel Patrașcu
2023-01-14  7:18 ` bug#60785: " Ricardo Wurmus

Code repositories for project(s) associated with this external index

	https://git.savannah.gnu.org/cgit/guix.git

This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.