[bug#55988] [PATCH 2/2] gnu: Add gdcm.

[Antero Mejr via Guix-patches via <guix-patches@gnu.org>]

* gnu/packages/bioinformatics.scm (gdcm): New variable.
---
 gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 87df6c3515..d151172725 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -23,6 +23,7 @@
 ;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
 ;;; Copyright © 2021, 2022 Simon Tournier <zimon.toutoune@gmail.com>
 ;;; Copyright © 2021 Felix Gruber <felgru@posteo.net>
+;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -15745,3 +15746,33 @@ (define-public wfmash
 module capable of computing base-level alignments for very large sequences.")
     (home-page "https://github.com/ekg/wfmash")
     (license license:expat)))
+
+(define-public gdcm
+  (package
+    (name "gdcm")
+    (version "2.8.9")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/malaterre/gdcm")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0v8ggym2kz26rwyvsyy3mg7j5jbvd1pz5cwchh29iyclagf0l9ry"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      ;; dev claims release branches (even numbered minor rev) don't need tests
+      ;; so the check step is not generated
+      #:tests? #f)) ;see CMakeLists.txt
+    (home-page "http://gdcm.sourceforge.net/wiki/index.php/Main_Page")
+    (synopsis "Grassroots DICOM library")
+    (description
+     "Grassroots DICOM (GDCM) is an implementation of the DICOM
+standard designed to be open source so that researchers may access clinical
+data directly. GDCM includes a file format definition and a network
+communications protocol, both of which should be extended to provide a full set
+of tools for a researcher or small medical imaging vendor to interface with an
+existing medical database.")
+    (license license:bsd-2)))
-- 
2.36.1