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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mailbox.org header.s=mail20150812 header.b=IIOsAlJf; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -5.19 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mailbox.org header.s=mail20150812 header.b=IIOsAlJf; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 654973AB5C X-Spam-Score: -5.19 X-Migadu-Scanner: scn0.migadu.com X-TUID: NXQ2d6NliYx2 * gnu/packages/bioinformatics.scm (gdcm): New variable. --- gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 87df6c3515..d151172725 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -23,6 +23,7 @@ ;;; Copyright © 2021 Hong Li ;;; Copyright © 2021, 2022 Simon Tournier ;;; Copyright © 2021 Felix Gruber +;;; Copyright © 2022 Antero Mejr ;;; ;;; This file is part of GNU Guix. ;;; @@ -15745,3 +15746,33 @@ (define-public wfmash module capable of computing base-level alignments for very large sequences.") (home-page "https://github.com/ekg/wfmash") (license license:expat))) + +(define-public gdcm + (package + (name "gdcm") + (version "2.8.9") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/malaterre/gdcm") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0v8ggym2kz26rwyvsyy3mg7j5jbvd1pz5cwchh29iyclagf0l9ry")))) + (build-system cmake-build-system) + (arguments + (list + ;; dev claims release branches (even numbered minor rev) don't need tests + ;; so the check step is not generated + #:tests? #f)) ;see CMakeLists.txt + (home-page "http://gdcm.sourceforge.net/wiki/index.php/Main_Page") + (synopsis "Grassroots DICOM library") + (description + "Grassroots DICOM (GDCM) is an implementation of the DICOM +standard designed to be open source so that researchers may access clinical +data directly. GDCM includes a file format definition and a network +communications protocol, both of which should be extended to provide a full set +of tools for a researcher or small medical imaging vendor to interface with an +existing medical database.") + (license license:bsd-2))) -- 2.36.1