From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <54991@debbugs.gnu.org>
Subject: [bug#54991] [PATCH 3/3] gnu: Add r-adductomicsr.
Date: Sun, 17 Apr 2022 17:10:46 +0200 [thread overview]
Message-ID: <20220417151046.2206-3-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20220417151046.2206-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.
---
gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6e4ed31154..2cd4c89aa9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1605,6 +1605,50 @@ (define-public r-absseq
ranking by fold-change and visualization.")
(license license:gpl3+)))
+(define-public r-adductomicsr
+ (package
+ (name "r-adductomicsr")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "adductomicsR" version))
+ (sha256
+ (base32
+ "0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl"))))
+ (properties `((upstream-name . "adductomicsR")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-adductdata
+ r-ade4
+ r-annotationhub
+ r-bootstrap
+ r-data-table
+ r-dosnow
+ r-dplyr
+ r-dt
+ r-experimenthub
+ r-fastcluster
+ r-foreach
+ r-fpc
+ r-mzr
+ r-orgmassspecr
+ r-pastecs
+ r-pracma
+ r-rcppeigen
+ r-reshape2
+ r-rvest
+ r-smoother
+ r-zoo))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/adductomicsR")
+ (synopsis "Processing of adductomic mass spectral datasets")
+ (description
+ "This package @code{adductomicsR} processes data generated by the
+@dfn{second stage of mass spectrometry} (MS2) to identify potentially adducted
+peptides from spectra that has been corrected for mass drift and retention time
+drift and quantifies level mass spectral peaks from @dfn{first stage of mass
+spectrometry} (MS1) data.")
+ (license license:artistic2.0)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
--
2.34.0
next prev parent reply other threads:[~2022-04-17 15:12 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-04-17 13:41 [bug#54991] gnu: Add r-adductomicsr, r-adductdata and r-orgmassspecr MadalinIonel.Patrascu
2022-04-17 15:10 ` [bug#54991] [PATCH 1/3] gnu: Add r-adductdata Mădălin Ionel Patrașcu
2022-04-17 15:10 ` [bug#54991] [PATCH 2/3] gnu: Add r-orgmassspecr Mădălin Ionel Patrașcu
2022-04-17 15:10 ` Mădălin Ionel Patrașcu [this message]
2022-05-02 13:21 ` bug#54991: gnu: Add r-adductomicsr, r-adductdata and r-orgmassspecr Ricardo Wurmus
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