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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="AC7/WMFR"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.26 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b="AC7/WMFR"; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: A5FC43CB41 X-Spam-Score: 6.26 X-Migadu-Scanner: scn0.migadu.com X-TUID: ZukB3lh8xGnV * gnu/packages/bioconductor.scm (r-adductomicsr): New variable. --- gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6e4ed31154..2cd4c89aa9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1605,6 +1605,50 @@ (define-public r-absseq ranking by fold-change and visualization.") (license license:gpl3+))) +(define-public r-adductomicsr + (package + (name "r-adductomicsr") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "adductomicsR" version)) + (sha256 + (base32 + "0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl")))) + (properties `((upstream-name . "adductomicsR"))) + (build-system r-build-system) + (propagated-inputs (list r-adductdata + r-ade4 + r-annotationhub + r-bootstrap + r-data-table + r-dosnow + r-dplyr + r-dt + r-experimenthub + r-fastcluster + r-foreach + r-fpc + r-mzr + r-orgmassspecr + r-pastecs + r-pracma + r-rcppeigen + r-reshape2 + r-rvest + r-smoother + r-zoo)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/adductomicsR") + (synopsis "Processing of adductomic mass spectral datasets") + (description + "This package @code{adductomicsR} processes data generated by the +@dfn{second stage of mass spectrometry} (MS2) to identify potentially adducted +peptides from spectra that has been corrected for mass drift and retention time +drift and quantifies level mass spectral peaks from @dfn{first stage of mass +spectrometry} (MS1) data.") + (license license:artistic2.0))) + (define-public r-aneufinder (package (name "r-aneufinder") -- 2.34.0