From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: 54535@debbugs.gnu.org
Subject: [bug#54535] [PATCH] gnu: r-signac: Update to 1.6.0.
Date: Wed, 23 Mar 2022 11:24:08 +0100 [thread overview]
Message-ID: <20220323102408.5337-1-madalinionel.patrascu@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0.
[propagated-inputs]: Remove AnnotationFilter, BiocGenerics,
Biostrings, biovizBase and ggbio.
[propagated-inputs]: Add qlcMatrix and tidyselect.
---
gnu/packages/bioinformatics.scm | 19 ++++++++-----------
1 file changed, 8 insertions(+), 11 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ada5965e5f..67793904f0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15275,11 +15275,11 @@ (define-public ensembl-vep
(license license:asl2.0))))
(define-public r-signac
- (let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c")
- (revision "1"))
+ (let ((commit "458e647b503c3472b0b98c0aeca934f452e039ee")
+ (revision "2"))
(package
(name "r-signac")
- (version (git-version "1.1.1" revision commit))
+ (version (git-version "1.6.0" revision commit))
(source
(origin
(method git-fetch)
@@ -15288,16 +15288,12 @@ (define-public r-signac
(commit commit)))
(file-name (git-file-name name version))
(sha256
- (base32
- "1yihhrv7zs87ax61la1nb4y12lg3knraw4b20k5digbcwm8488lb"))))
+ (base32 "1hgwpgighkvfkai80n4d2252s4sdpa4faag4ncdiylicl5wa7lbj"))))
(properties `((upstream-name . "Signac")))
(build-system r-build-system)
(inputs (list zlib))
(propagated-inputs
- (list r-annotationfilter
- r-biocgenerics
- r-biostrings
- r-biovizbase
+ (list r-biocgenerics
r-data-table
r-dplyr
r-fastmatch
@@ -15305,7 +15301,6 @@ (define-public r-signac
r-future-apply
r-genomeinfodb
r-genomicranges
- r-ggbio
r-ggforce
r-ggplot2
r-ggrepel
@@ -15316,6 +15311,7 @@ (define-public r-signac
r-matrix
r-patchwork
r-pbapply
+ r-qlcmatrix
r-rcpp
r-rcpproll
r-rsamtools
@@ -15324,7 +15320,8 @@ (define-public r-signac
r-seurat
r-seuratobject
r-stringi
- r-tidyr))
+ r-tidyr
+ r-tidyselect))
(home-page "https://github.com/timoast/signac/")
(synopsis "Analysis of single-cell chromatin data")
(description
--
2.34.0
next reply other threads:[~2022-03-23 10:26 UTC|newest]
Thread overview: 2+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-03-23 10:24 Mădălin Ionel Patrașcu [this message]
2022-03-29 15:46 ` bug#54535: [PATCH] gnu: r-signac: Update to 1.6.0 Ricardo Wurmus
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=20220323102408.5337-1-madalinionel.patrascu@mdc-berlin.de \
--to=madalinionel.patrascu@mdc-berlin.de \
--cc=54535@debbugs.gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this external index
https://git.savannah.gnu.org/cgit/guix.git
This is an external index of several public inboxes,
see mirroring instructions on how to clone and mirror
all data and code used by this external index.