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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 6.00 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=AHQBAVVp; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: D2121BB15 X-Spam-Score: 6.00 X-Migadu-Scanner: scn0.migadu.com X-TUID: WqG9Ge1tyvof * gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0. [propagated-inputs]: Remove AnnotationFilter, BiocGenerics, Biostrings, biovizBase and ggbio. [propagated-inputs]: Add qlcMatrix and tidyselect. --- gnu/packages/bioinformatics.scm | 19 ++++++++----------- 1 file changed, 8 insertions(+), 11 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ada5965e5f..67793904f0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15275,11 +15275,11 @@ (define-public ensembl-vep (license license:asl2.0)))) (define-public r-signac - (let ((commit "e0512d348adeda4a3f23a2e8f56d1fe09840e03c") - (revision "1")) + (let ((commit "458e647b503c3472b0b98c0aeca934f452e039ee") + (revision "2")) (package (name "r-signac") - (version (git-version "1.1.1" revision commit)) + (version (git-version "1.6.0" revision commit)) (source (origin (method git-fetch) @@ -15288,16 +15288,12 @@ (define-public r-signac (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 - "1yihhrv7zs87ax61la1nb4y12lg3knraw4b20k5digbcwm8488lb")))) + (base32 "1hgwpgighkvfkai80n4d2252s4sdpa4faag4ncdiylicl5wa7lbj")))) (properties `((upstream-name . "Signac"))) (build-system r-build-system) (inputs (list zlib)) (propagated-inputs - (list r-annotationfilter - r-biocgenerics - r-biostrings - r-biovizbase + (list r-biocgenerics r-data-table r-dplyr r-fastmatch @@ -15305,7 +15301,6 @@ (define-public r-signac r-future-apply r-genomeinfodb r-genomicranges - r-ggbio r-ggforce r-ggplot2 r-ggrepel @@ -15316,6 +15311,7 @@ (define-public r-signac r-matrix r-patchwork r-pbapply + r-qlcmatrix r-rcpp r-rcpproll r-rsamtools @@ -15324,7 +15320,8 @@ (define-public r-signac r-seurat r-seuratobject r-stringi - r-tidyr)) + r-tidyr + r-tidyselect)) (home-page "https://github.com/timoast/signac/") (synopsis "Analysis of single-cell chromatin data") (description -- 2.34.0