From: Gerd Heber <gerd.heber@gmail.com>
To: 46830@debbugs.gnu.org
Cc: Gerd Heber <gheber@hdfgroup.org>
Subject: [bug#46830] [PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/maths.scm (hdf5-1.12-parallel-openmpi): New package based on HDF5 1.12.0
Date: Sun, 28 Feb 2021 07:33:14 -0600 [thread overview]
Message-ID: <20210228133314.22935-1-gheber@hdfgroup.org> (raw)
---
gnu/packages/maths.scm | 34 +++++++++++++++++++++++++++++++++-
1 file changed, 33 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 58433d4b0c..df101635ab 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1451,7 +1451,7 @@ Swath).")
(license (license:non-copyleft home-page))))
(define-public hdf5-parallel-openmpi
- (package/inherit hdf5-1.10 ;use the latest
+ (package/inherit hdf5-1.10
(name "hdf5-parallel-openmpi")
(inputs
`(("mpi" ,openmpi)
@@ -1482,6 +1482,38 @@ Swath).")
#t))))))
(synopsis "Management suite for data with parallel IO support")))
+(define-public hdf5-1.12-parallel-openmpi
+ (package/inherit hdf5-1.12
+ (name "hdf5-1.12-parallel-openmpi")
+ (inputs
+ `(("mpi" ,openmpi)
+ ,@(package-inputs hdf5)))
+ (arguments
+ (substitute-keyword-arguments (package-arguments hdf5)
+ ((#:configure-flags flags)
+ ``("--enable-parallel"
+ ,@(delete "--enable-cxx"
+ (delete "--enable-threadsafe" ,flags))))
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (add-after 'build 'mpi-setup
+ ,%openmpi-setup)
+ (add-before 'check 'patch-tests
+ (lambda _
+ ;; OpenMPI's mpirun will exit with non-zero status if it
+ ;; detects an "abnormal termination", i.e. any process not
+ ;; calling MPI_Finalize(). Since the test is explicitly
+ ;; avoiding MPI_Finalize so as not to have at_exit and thus
+ ;; H5C_flush_cache from being called, mpirun will always
+ ;; complain, so turn this test off.
+ (substitute* "testpar/Makefile"
+ (("(^TEST_PROG_PARA.*)t_pflush1(.*)" front back)
+ (string-append front back "\n")))
+ (substitute* "tools/test/h5diff/testph5diff.sh"
+ (("/bin/sh") (which "sh")))
+ #t))))))
+ (synopsis "Management suite for data with parallel IO support")))
+
(define-public hdf5-blosc
(package
(name "hdf5-blosc")
--
2.30.1
next reply other threads:[~2021-02-28 17:20 UTC|newest]
Thread overview: 9+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-02-28 13:33 Gerd Heber [this message]
2021-02-28 22:42 ` [bug#46830] [PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/maths.scm (hdf5-1.12-parallel-openmpi): New package based on HDF5 1.12.0 Gerd Heber via web
2021-03-01 10:41 ` zimoun
[not found] ` <CANnLdWFK--F3vTC7R6WtUMYOKA-MAJCWj6LXS42mv-ZNKF63YA@mail.gmail.com>
2021-03-02 9:41 ` zimoun
2021-03-02 19:39 ` Ludovic Courtès
2021-03-03 14:10 ` Gerd Heber
2021-03-05 1:08 ` zimoun
2021-03-08 14:01 ` Ludovic Courtès
2023-09-13 9:29 ` bug#46830: Closing Andreas Enge
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