From: zimoun <zimon.toutoune@gmail.com>
To: 36797@debbugs.gnu.org
Subject: [bug#36797] [PATCH 08/11] gnu: Add r-flowpeaks.
Date: Wed, 24 Jul 2019 20:22:01 +0200 [thread overview]
Message-ID: <20190724182204.6818-9-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com>
* gnu/packages/bioconductor.scm (r-flowpeaks): New variable.
---
gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0f023665c2..ab4d9f4075 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4907,3 +4907,26 @@ and to both short and long sequence reads.")
(description
"Identifies cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection. Note: R 2.11.0 or newer is required.")
(license license:artistic2.0)))
+
+(define-public r-flowpeaks
+ (package
+ (name "r-flowpeaks")
+ (version "1.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "flowPeaks" version))
+ (sha256
+ (base32
+ "1ncz7n6n39svi444yy29ip53398392s3m6z0h2a77rhcnzg456wy"))))
+ (properties `((upstream-name . "flowPeaks")))
+ (build-system r-build-system)
+ (inputs `(("gsl" ,gsl)))
+ (home-page
+ "https://bioconductor.org/packages/flowPeaks")
+ (synopsis
+ "An R package for flow data clustering")
+ (description
+ "This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.")
+ (license license:artistic2.0))) ;TODO: artistic1.0 does not exist
+
--
2.21.0
next prev parent reply other threads:[~2019-07-24 18:23 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2019-07-24 18:21 [bug#36789] [PATCH 00/11] Add r packages to process flow cytometry data zimoun
2019-07-24 18:21 ` [bug#36790] [PATCH 01/11] gnu: Add r-umap zimoun
2019-07-24 19:17 ` [bug#36790] Merge 36789 36790 zimoun
2019-07-24 18:21 ` [bug#36791] [PATCH 02/11] gnu: Add r-kableextra zimoun
2019-07-24 18:21 ` [bug#36792] [PATCH 03/11] gnu: Add r-all zimoun
2019-07-24 18:21 ` [bug#36793] [PATCH 04/11] gnu: Add r-flowcore zimoun
2019-07-24 18:21 ` [bug#36794] [PATCH 05/11] gnu: Add r-flowutils zimoun
2019-07-24 18:21 ` [bug#36795] [PATCH 06/11] gnu: Add r-consensusclusterplus zimoun
2019-07-24 18:22 ` [bug#36796] [PATCH 07/11] gnu: Add r-flowmeans zimoun
2019-07-24 18:22 ` zimoun [this message]
2019-07-24 20:51 ` [bug#36797] [PATCH 08/11] gnu: Add r-flowpeaks Ricardo Wurmus
2020-02-21 17:07 ` bug#36797: patches merged zimoun
2019-07-24 18:22 ` [bug#36798] [PATCH 09/11] gnu: Add r-flowsom zimoun
2019-07-24 18:22 ` [bug#36799] [PATCH 10/11] gnu: Add r-mixomics zimoun
2019-07-24 18:22 ` [bug#36800] [PATCH 11/11] gnu: Add r-depecher zimoun
2019-07-24 20:49 ` Ricardo Wurmus
2019-07-25 9:54 ` zimoun
2019-07-25 12:45 ` Ricardo Wurmus
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