[bug#67915] [PATCH 00/32] gnu: Astronomy 2023/12 updates.

[bug#67915] [PATCH 00/32] gnu: Astronomy 2023/12 updates.

[Sharlatan Hellseher]

Hi Guix,

Soon is New Year and here is a fresh portion of updated and improved packages
from (gnu packages astronomy) for every stars lovers!

As previous patch series this one is tested on x86_64-linux system and does
not introduce any regressions.

> ./pre-inst-env guix build --rounds=2 aocommon aoflagger calceph cfitsio
  julia-fitsio libpasastro phd2 python-asdf-astropy python-astropy-healpix
  python-crds python-drizzle python-drms python-gwcs python-jplephem
  python-mpl-animators python-photutils python-pynbody python-radio-beam
  python-regions python-reproject python-spectral-cube python-spherical-geometry
  python-stdatamodels python-stsci-imagestats python-stsynphot python-synphot
  python-tweakwcs splash wcslib

/gnu/store/zr4h10lk2ihd6wmzn8225r6mjiq2gy7r-wcslib-8.2.2
/gnu/store/2ah3m2v02qgcnz3i0wc0r2rpmkwdd4gm-splash-3.10.1
/gnu/store/l8n4217asmp349z69kfr00ivjr4k3nbh-python-tweakwcs-0.8.5
/gnu/store/2fzip0dwynah0ywvi096wdyi3q99lww5-python-synphot-1.3.0
/gnu/store/52biygnkphr7j5a2pjrlml06kabpc6l2-python-stsynphot-1.3.0
/gnu/store/ffdznkk0k310h4gdqa3cnbk93bsz7q95-python-stsci-imagestats-1.8.0
/gnu/store/4m9n3zl6vlynm8wjfqr96aqpbpxy3y6g-python-stdatamodels-1.9.0
/gnu/store/63y7rrjsswfj9njm495j7xpz4yq86ndj-python-spherical-geometry-1.3.1
/gnu/store/zccgc9xaxa7mm0wzv0668m76q1g86cv5-python-spectral-cube-0.6.5
/gnu/store/ngyhr87qyi8zqym96z8hl5k025diwnr6-python-reproject-0.13.0
/gnu/store/fix540lccrv7c23w35yf7d0wi2yhgvv1-python-regions-0.8
/gnu/store/iy68s6zdvq3pam9ybn13g3wnsirjmc71-python-radio-beam-0.3.7
/gnu/store/fk0y1vqkwnmdkz8bafkk838g58xsaq4c-python-pynbody-1.5.2
/gnu/store/dhcfz0171jg82v6zh8v8q139prxbqg60-python-photutils-1.10.0
/gnu/store/yypha5a38f5i9vd03nic9884shcg3kkg-python-mpl-animators-1.1.1
/gnu/store/m34dd6cykr9gbd1zf4ldv196gnkycd24-python-jplephem-2.21
/gnu/store/i4y4p2rf0b0q9i70i59pf8m67fd81hj0-python-gwcs-0.20.0
/gnu/store/4hddwqbkrads0l8j3al1pdsbwqwpbyd6-python-drms-0.7.0
/gnu/store/6ry0dg8nbi0wgfz9d1jcymyxkj18p28a-python-drizzle-1.14.4
/gnu/store/w29hp5wkslpliz7wgbh6dzv4igwy0cvs-python-crds-11.17.13
/gnu/store/48yxldyxzal37nrdlgszrkw2f2i8pgbf-python-astropy-healpix-1.0.2
/gnu/store/5a9g7i7cw3ljw0jbjc69giywzf43v79r-python-asdf-astropy-0.5.0
/gnu/store/p1psb256vvpl6v323gdba5x50rccx6d6-phd2-2.6.12
/gnu/store/lsh4hiya5z84y0cw2l67bhg8mpfp4rz5-libpasastro-1.4.2
/gnu/store/gy4l5jhj7fm212ymdxb0h5fswmvkp3bq-julia-fitsio-0.17.1
/gnu/store/jj344l6cxqnkdxg5fdzdf0qkfqvgpifw-cfitsio-4.3.1
/gnu/store/az5mgwk016fcf8lc1w2lrld9l8f8sckc-calceph-3.5.4
/gnu/store/s5nfnz3qcyxqrbn1nwx1ds5y0d82a7g2-aoflagger-3.4.0
/gnu/store/jjipsfd9x1p81wmrfb2qlz8sigy2pzm2-aocommon-0.0.0-2.9272ea3

Building the following 24 packages would ensure 76 dependent packages are
rebuilt: swarp@2.41.5 imppg@0.6.5 splash@3.10.1 sextractor@2.28.0
stellarium@23.3 indi@2.0.4 python-fitsio@1.2.1 phd2@2.6.12 siril@1.2.0
glnemo2@1.21.0 julia-wcs@0.6.2 alfa@2.2 julia-fitsio@0.17.1 gwenview@23.04.3
labplot@2.9.0 gnuastro@0.21 aoflagger@3.4.0 python-asdf@3.0.1 python-sunpy@5.0.1
python-spectral-cube@0.6.5 python-poliastro@0.17.0 python-astroalign@2.5.1
python-jwst@1.12.5 python-tslearn@0.6.2

> ./pre-inst-env guix build swarp@2.41.5 imppg@0.6.5 splash@3.10.1
  sextractor@2.28.0 stellarium@23.3 indi@2.0.4 python-fitsio@1.2.1 phd2@2.6.12
  siril@1.2.0 glnemo2@1.21.0 julia-wcs@0.6.2 alfa@2.2 julia-fitsio@0.17.1
  gwenview@23.04.3 labplot@2.9.0 gnuastro@0.21 aoflagger@3.4.0 python-asdf@3.0.1
  python-sunpy@5.0.1 python-spectral-cube@0.6.5 python-poliastro@0.17.0
  python-astroalign@2.5.1 python-jwst@1.12.5 python-tslearn@0.6.2

/gnu/store/w2hkmxp0qmw16wqhckfv3y93h1v7g3wx-python-tslearn-0.6.2
/gnu/store/041g35xfdbx8igdl0f0q129xp355n83z-python-jwst-1.12.5
/gnu/store/s9q6950nq9z5f5rb69b3bxs6fm83jz8m-python-astroalign-2.5.1
/gnu/store/hy7p0nrradsz7f35vj7q89wdlifrvwmy-python-poliastro-0.17.0
/gnu/store/zccgc9xaxa7mm0wzv0668m76q1g86cv5-python-spectral-cube-0.6.5
/gnu/store/di7hrq1dl4cbhc17s3s3nanvc2c9kd8i-python-sunpy-5.0.1
/gnu/store/vz4xgia24jaf1q487k6h6l4x3ddba2m9-python-asdf-3.0.1
/gnu/store/s5nfnz3qcyxqrbn1nwx1ds5y0d82a7g2-aoflagger-3.4.0
/gnu/store/6hl6phgw0cl582b09sj5ark9jjzgy2jj-gnuastro-0.21
/gnu/store/2myp6dwkhzc9a5mllz8y1x59abcbkazk-labplot-2.9.0
/gnu/store/44dnskhpy2anzyypvp1z4r4p8zi78jcl-gwenview-23.04.3
/gnu/store/gy4l5jhj7fm212ymdxb0h5fswmvkp3bq-julia-fitsio-0.17.1
/gnu/store/kdwz6gc3972rj5xylk7wavq4ggsp98wa-alfa-2.2
/gnu/store/3xawvn9jlchjkqhndlk9ay2bqbc45ph9-julia-wcs-0.6.2
/gnu/store/99fzbzr9f5dxvmvi86h1vahilcmqr2ck-glnemo2-1.21.0
/gnu/store/dvhkxx56b5b49fbngvsvxqd3vvcs7ijm-siril-1.2.0
/gnu/store/p1psb256vvpl6v323gdba5x50rccx6d6-phd2-2.6.12
/gnu/store/cszb62wbdc99jrbf95x1qqjg9b8zlshk-python-fitsio-1.2.1
/gnu/store/lfagykzkh8sh907bqkmb69g12hyz5l2b-indi-2.0.4
/gnu/store/3wkp5pg5r31nlf6hn5ymadqrjzhb5a6i-stellarium-23.3
/gnu/store/1wag8n77fr29k6yymf0c6maxsrzcy9hm-sextractor-2.28.0
/gnu/store/2ah3m2v02qgcnz3i0wc0r2rpmkwdd4gm-splash-3.10.1
/gnu/store/ww538kn0a78qzy49jl71splmbf2i6bbv-imppg-0.6.5
/gnu/store/ghr9v98gziadwrk02xzgviidj6k76fjc-swarp-2.41.5

Sharlatan Hellseher (32):
  gnu: aocommon: Update to 0.0.0-2.9272ea3.
  gnu: aoflagger: Update to 3.4.0.
  gnu: calceph: Update to 3.5.4.
  gnu: cfitsio: Update to 4.3.1.
  gnu: libpasastro: Update to 1.4.2.
  gnu: phd2: Update to 2.6.12.
  gnu: python-asdf-astropy: Update to 0.5.0.
  gnu: python-astropy-healpix: Update to 1.0.2.
  gnu: python-crds: Update to 11.17.13.
  gnu: python-drizzle: Update to 1.14.4.
  gnu: python-drms: Update to 0.7.0.
  gnu: python-gwcs: Update to 0.20.0.
  gnu: python-jplephem: Update to 2.21.
  gnu: python-mpl-animators: Update to 1.1.1.
  gnu: julia-fitsio: Update to 0.17.1.
  gnu: python-photutils: Update to 1.10.0.
  gnu: python-pynbody: Update to 1.5.2.
  gnu: python-radio-beam: Update to 0.3.7.
  gnu: python-regions: Update to 0.8.
  gnu: python-reproject: Update to 0.13.0.
  gnu: python-spectral-cube: Update to 0.6.5.
  gnu: python-spherical-geometry: Update to 1.3.1.
  gnu: python-stdatamodels: Update to 1.9.0.
  gnu: python-stsci-imagestats: Update to 1.8.0.
  gnu: python-stsci-imagestats: Enable tests
  gnu: python-stsynphot: Update to 1.3.0.
  gnu: python-synphot: Update to 1.3.0.
  gnu: python-synphot: Adjust package style.
  gnu: python-tweakwcs: Update to 0.8.5.
  gnu: splash: Update to 3.10.1.
  gnu: wcslib: Update to 8.2.2.
  gnu: python-regions: Use G-expressions.

 gnu/packages/astronomy.scm | 211 +++++++++++++++++++++----------------
 gnu/packages/julia-xyz.scm |   4 +-
 2 files changed, 123 insertions(+), 92 deletions(-)


base-commit: ac61e9705fb8c450c6cd0c1731fbb1b909c1f944
-- 
2.41.0

[bug#67915] [PATCH 01/32] gnu: aocommon: Update to 0.0.0-2.9272ea3.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (aocommon): Update to 0.0.0-2.9272ea3.

Change-Id: I14d7e9df0031d5f631b595f1214a88529b89db1f
---
 gnu/packages/astronomy.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index da15283ef3..b89f9c8667 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -157,8 +157,8 @@ (define-public alfa
     (license license:gpl3)))
 
 (define-public aocommon
-  (let ((commit "7329a075271edab8f6264db649e81e62b2b6ae5e")
-        (revision "1"))
+  (let ((commit "9272ea36693a7ce7aa3524a9e212a60a509c3b8a")
+        (revision "2"))
     (package
       (name "aocommon")
       (version (git-version "0.0.0" revision commit))
@@ -169,7 +169,7 @@ (define-public aocommon
                (url "https://gitlab.com/aroffringa/aocommon")
                (commit commit)))
          (sha256
-          (base32 "0qcfax6pbzs0yigy0x8xibrkk539wm2pbvjsb4lh50fybir02nix"))
+          (base32 "0klcrrlkc4sjpr83m2gnwb65lg798rydyvrlpangf7np1qg4zbk5"))
          (file-name (git-file-name name version))))
       (build-system copy-build-system)
       (arguments
-- 
2.41.0

[bug#67915] [PATCH 02/32] gnu: aoflagger: Update to 3.4.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (aoflagger): Update to 3.4.0.

Change-Id: Iac1581d81f4f0527cf843631ed3335b53dadbf52
---
 gnu/packages/astronomy.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b89f9c8667..d4af0eadbb 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -278,7 +278,7 @@ (define-public calcmysky-qt5
 (define-public aoflagger
   (package
     (name "aoflagger")
-    (version "3.2.0")
+    (version "3.4.0")
     (source
      (origin
        (method git-fetch)
@@ -286,16 +286,15 @@ (define-public aoflagger
              (url "https://gitlab.com/aroffringa/aoflagger")
              (commit (string-append "v" version))))
        (sha256
-        (base32 "1dcbfrbiybhpbypna2xhddx1wk7yifh38ha2r6p5rzsikzwlsin1"))
+        (base32 "0dxmcy04cayhs4s2z41wls1dnmg9hkffvlqcmc660idqziffvv1g"))
        (patches
         (search-patches "aoflagger-use-system-provided-pybind11.patch"))
        (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (arguments
      (list
-      ;; XXX: Tests require external files download from
+      ;; Tests require external files download from
       ;; https://www.astron.nl/citt/ci_data/aoflagger/
-      ;; FIXME: runtest is not found
       #:tests? #f
       #:configure-flags
       #~(list (string-append "-DCASACORE_ROOT_DIR="
-- 
2.41.0

[bug#67915] [PATCH 03/32] gnu: calceph: Update to 3.5.4.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (calceph): Update to 3.5.4.

Change-Id: I0537f493c09aa09feeae3b439e6aa54c3bcab782
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d4af0eadbb..8b83f27bb2 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -186,7 +186,7 @@ (define-public aocommon
 (define-public calceph
   (package
     (name "calceph")
-    (version  "3.5.3")
+    (version  "3.5.4")
     (source
      (origin
        (method url-fetch)
@@ -194,7 +194,7 @@ (define-public calceph
              "https://www.imcce.fr/content/medias/recherche/equipes/asd/calceph/calceph-"
              version ".tar.gz"))
        (sha256
-        (base32 "12apl806h8qx1kq74malq3828jqapwfi27cn05pvvxfiq7gfpllx"))))
+        (base32 "1d95k62926p6h43qh9pxbpa5wm8rby5la9pqq3k6sdyg4gl39a69"))))
     (build-system gnu-build-system)
     (native-inputs
      (list gfortran))
-- 
2.41.0

[bug#67915] [PATCH 04/32] gnu: cfitsio: Update to 4.3.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (cfitsio): Update to 4.3.1.

Change-Id: I6181f161d1dcbf3ec16e229bc196d56eca470027
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8b83f27bb2..c987a5e1c6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -451,7 +451,7 @@ (define-public ccfits
 (define-public cfitsio
   (package
     (name "cfitsio")
-    (version "4.2.0")
+    (version "4.3.1")
     (source
      (origin
        (method url-fetch)
@@ -459,7 +459,7 @@ (define-public cfitsio
              "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
              "cfitsio-" version ".tar.gz"))
        (sha256
-        (base32 "128qsv2q0f0g714ahlsixiikvvbwxi9bg9q9pcr5cd3f7wdkv9gb"))))
+        (base32 "1gk2a07ypmc8rcngakcarprznq7hi3xr9szfv3hy2yv80ppci9s7"))))
     (build-system gnu-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 05/32] gnu: libpasastro: Update to 1.4.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (libpasastro): Update to 1.4.2.

Change-Id: I387f63fe1ebfcc95c33177b13325611e16cd89df
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c987a5e1c6..f8712d0d22 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2983,7 +2983,7 @@ (define-public libskry
 (define-public libpasastro
   (package
     (name "libpasastro")
-    (version "1.4.1")
+    (version "1.4.2")
     (source
      (origin
        (method git-fetch)
@@ -2992,7 +2992,7 @@ (define-public libpasastro
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1h92p9ph3zi4w8krny1azd9wgwna2nf07ims983jcky1chkfm0is"))))
+        (base32 "1na3gyb3nzb5gdgccs1653j2gnz6w3v1mqzhyhkx3yqw8bs3q5x0"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f
-- 
2.41.0

[bug#67915] [PATCH 06/32] gnu: phd2: Update to 2.6.12.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (phd2): Update to 2.6.12.

Change-Id: I83cc7a11eda6caee2d7796e45dab72ccea358a69
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f8712d0d22..8013ad267a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -969,7 +969,7 @@ (define-public gnuastro
 (define-public phd2
   (package
     (name "phd2")
-    (version "2.6.11")
+    (version "2.6.12")
     (source
      (origin
        (method git-fetch)
@@ -978,7 +978,7 @@ (define-public phd2
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0n87xsv9gzrwk1ygws4vw397ffq40xybp5b3c3bd5kcmff0avaw9"))
+        (base32 "16695vyczl861fz5qinp23wqn6hzv5h1aspz9x21x67w0a3smbmy"))
        (modules '((guix build utils)
                   (ice-9 ftw)
                   (srfi srfi-26)))
-- 
2.41.0

[bug#67915] [PATCH 07/32] gnu: python-asdf-astropy: Update to 0.5.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.5.0.

Change-Id: I8e3473eaefb922f3cff135fd084f467f36dbedb4
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8013ad267a..8b50ac7fdb 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4036,13 +4036,13 @@ (define python-asdf-unit-schemas
 (define-public python-asdf-astropy
   (package
     (name "python-asdf-astropy")
-    (version "0.4.0")
+    (version "0.5.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "asdf-astropy" version))
        (sha256
-        (base32 "1difb2y1hlalbhrw8znwmmc0vzgg44zfsay98lpllb7y0536fas6"))))
+        (base32 "061y7r1d2fqlr8a6gyaffqa3z5m0ymljahhvxzcb71355xkqig7v"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:phases #~(modify-phases %standard-phases
-- 
2.41.0

[bug#67915] [PATCH 08/32] gnu: python-astropy-healpix: Update to 1.0.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-astropy-healpix): Update to 1.0.2.

Change-Id: I94794985b953d2820fd215d82dd06196ac3f302f
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 8b50ac7fdb..77ccf0ac18 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1571,13 +1571,13 @@ (define-public python-astropy
 (define-public python-astropy-healpix
   (package
     (name "python-astropy-healpix")
-    (version "1.0.0")
+    (version "1.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "astropy_healpix" version))
        (sha256
-        (base32 "18zfmdv0vs0yawirq8c2mpjxx7bvy66z0rlcyc1n6s0fl5ifz0pl"))))
+        (base32 "0fij80ws16xzbph8z9v27w54dnc3vry8fk9p3mvxrglnjgnscvq5"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 09/32] gnu: python-crds: Update to 11.17.13.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-crds): Update to 11.17.13.

Change-Id: I1daf4f9a0ecd3b791979b016a678085170f8e9f7
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 77ccf0ac18..0815545f96 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1846,13 +1846,13 @@ (define-public python-cdflib
 (define-public python-crds
   (package
     (name "python-crds")
-    (version "11.17.9")
+    (version "11.17.13")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "crds" version))
               (sha256
                (base32
-                "0ha7ibs5lmqs9pcr546jyxzgrmx1xyqps7fsp220rvlsbsisdgm0"))))
+                "0jcvyiq3z2kbd8g33gk5r99rvhn9i50lz7ngqibdafh390dz5zhc"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 10/32] gnu: python-drizzle: Update to 1.14.4.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-drizzle): Update to 1.14.4.

Change-Id: I2f2415b93af251df2608d18046cda7b4f63e7f8a
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0815545f96..b6ba927f79 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1954,7 +1954,7 @@ (define-public python-drms
 (define-public python-drizzle
   (package
     (name "python-drizzle")
-    (version "1.14.3")
+    (version "1.14.4")
     (source
      (origin
        (method git-fetch) ;PyPi doesn't have the test data sets
@@ -1963,7 +1963,7 @@ (define-public python-drizzle
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "04gncwg76yivcaq7rwgsw5k8w4h3c4wcrjcamb53h0d5s820z7dl"))))
+        (base32 "01zsq1r3p9lig0aik01szncd7nbmyi561mhi1n44yjhh7d86fp8y"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 11/32] gnu: python-drms: Update to 0.7.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-drms): Update to 0.7.0.

Change-Id: I963cf7cc3c4dd2d48e063e6939b018d404c8de16
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b6ba927f79..a95f6c1dba 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1928,13 +1928,13 @@ (define-public python-czml3
 (define-public python-drms
   (package
     (name "python-drms")
-    (version "0.6.4")
+    (version "0.7.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "drms" version))
        (sha256
-        (base32 "0mkrmr55fgca441z7hvsyri6x9cjsh0sfas3hrj0k1k10k8vszbw"))))
+        (base32 "0smc39nndxqbznjcpnylsag1sc2ksfjhxh4dwiqbki8q6v5ahx84"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list python-astropy
-- 
2.41.0

[bug#67915] [PATCH 12/32] gnu: python-gwcs: Update to 0.20.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-gwcs): Update to 0.20.0.

Change-Id: I1b463fd34d487e91895127c42ca484652c87fd0a
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a95f6c1dba..d8270e47b8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4096,13 +4096,13 @@ (define python-asdf-wcs-schemas
 (define-public python-gwcs
   (package
     (name "python-gwcs")
-    (version "0.19.0")
+    (version "0.20.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "gwcs" version))
        (sha256
-        (base32 "1f3h41aq4nwcl6k80jb9s8shn2mhvz32mx9qhcm1xmcqrflqyf52"))))
+        (base32 "1vhvs0mcwrw0128q9pd9v21wl173lspj5rvygqr19ljncralbx73"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list python-jsonschema
-- 
2.41.0

[bug#67915] [PATCH 13/32] gnu: python-jplephem: Update to 2.21.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-jplephem): Update to 2.21.

Change-Id: I26724a009b776a0f6541d6265a7ae8dfc94d2572
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d8270e47b8..b2948bd903 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3393,13 +3393,13 @@ (define-public sunclock
 (define-public python-jplephem
   (package
     (name "python-jplephem")
-    (version "2.20")
+    (version "2.21")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "jplephem" version))
        (sha256
-        (base32 "1yp1l3n07849411099f976ps0pyv8jk8k5l9da9nhv54ir86v65v"))))
+        (base32 "0mcdhb22vwbyavcnkcwchj0cxnxsvaw5563v464ipwlm0rhln69l"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 14/32] gnu: python-mpl-animators: Update to 1.1.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-mpl-animators): Update to 1.1.1.

Change-Id: I7cd7f70724286480c469820659e922699461b7e0
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index b2948bd903..2017b791c7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2040,13 +2040,13 @@ (define-public python-hvpy
 (define-public python-mpl-animators
   (package
     (name "python-mpl-animators")
-    (version "1.1.0")
+    (version "1.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "mpl_animators" version))
        (sha256
-        (base32 "12kjmj7rn3pk9ly82h5s5hn0kl3kxkr7bgkz9zr9k59pir8z1r8b"))))
+        (base32 "078dshs383ny182dac0spg7z0iilcwa0fnwv1vizsr6p1d3ar98b"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
-- 
2.41.0

[bug#67915] [PATCH 15/32] gnu: julia-fitsio: Update to 0.17.1.

[Sharlatan Hellseher]

* gnu/packages/julia-xyz.scm (julia-fitsio): Update to 0.17.1.

Change-Id: Icfac3b55ff3a818e5710af8083e0ab48ed32cc01
---
 gnu/packages/julia-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 3974bbdd2a..f8e3ac86cb 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2314,7 +2314,7 @@ (define-public julia-finitedifferences
 (define-public julia-fitsio
   (package
     (name "julia-fitsio")
-    (version "0.17.0")
+    (version "0.17.1")
     (source
      (origin
        (method git-fetch)
@@ -2323,7 +2323,7 @@ (define-public julia-fitsio
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "10w7cdb2cvcwpkcfdz2fwl4ji5rfdv8w9msc9gfd8d34k58bk8c5"))))
+        (base32 "1mvrr13qvzdpqdp01hzqqyx84cxagyvjwkbizsp3xaabckg48pnz"))))
     (build-system julia-build-system)
     (native-inputs
      (list julia-aqua julia-orderedcollections))
-- 
2.41.0

[bug#67915] [PATCH 15/32] gnu: julia-fitsio: Update to 0.17.1.

[Simon Tournier]

Hi Oleg,

On Wed, 20 Dec 2023 at 00:53, Sharlatan Hellseher <sharlatanus@gmail.com> wrote:
> * gnu/packages/julia-xyz.scm (julia-fitsio): Update to 0.17.1.

LGTM.  Well, I do not know the status of the series.  Feel free to push
this one about  Julia. :-)

Cheers,
simon

[bug#67915] [PATCH 16/32] gnu: python-photutils: Update to 1.10.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-photutils): Update to 1.10.0.
[propagated-inputs]: Add python-bottleneck, python-gwcs, python-matplotlib,
python-rasterio, python-scikit-image, python-scikit-learn,
python-scipy, python-shapely, and python-tqdm.
[native-inputs]: Add python-semantic-version.

Change-Id: Ic2a879b653b56b84fff826b85108088db5cbf888
---
 gnu/packages/astronomy.scm | 17 ++++++++++++++---
 1 file changed, 14 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2017b791c7..1b707ffc56 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2066,13 +2066,13 @@ (define-public python-mpl-animators
 (define-public python-photutils
   (package
     (name "python-photutils")
-    (version "1.9.0")
+    (version "1.10.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "photutils" version))
        (sha256
-        (base32 "0gjvrmcb10lyqx3h9521zqskqngd5xcp3l9h2b02mk1p7q54mzdy"))))
+        (base32 "148zhdxhlcgj6dxyzaz78bzxw1q44qa9q9sfdqbfbla0s0w2jaay"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -2091,11 +2091,22 @@ (define-public python-photutils
               (make-file-writable "photutils/_compiler.c")
               (invoke "python" "setup.py" "build_ext" "--inplace"))))))
     (propagated-inputs
-     (list python-astropy python-numpy))
+     (list python-astropy
+           python-bottleneck
+           python-gwcs
+           python-matplotlib
+           python-numpy
+           python-rasterio
+           python-scikit-image
+           python-scikit-learn
+           python-scipy
+           python-shapely
+           python-tqdm))
     (native-inputs
      (list python-cython
            python-extension-helpers
            python-pytest-astropy
+           python-semantic-version
            python-setuptools-scm))
     (home-page "https://github.com/astropy/photutils")
     (synopsis "Source detection and photometry")
-- 
2.41.0

[bug#67915] [PATCH 17/32] gnu: python-pynbody: Update to 1.5.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-pynbody): Update to 1.5.2.
[arguments]<#:test-flags>: Add to ignore list 'tests/copy_on_access_test.py'.

Change-Id: Ib3c566602e036b0396a79fd41b18be0ebbe5235c
---
 gnu/packages/astronomy.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1b707ffc56..6df6416e7d 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3548,7 +3548,7 @@ (define-public python-pyerfa
 (define-public python-pynbody
   (package
     (name "python-pynbody")
-    (version "1.4.2")
+    (version "1.5.2")
     (source
      (origin
        (method git-fetch) ;PyPi doesn't have not prebuit version.
@@ -3557,7 +3557,7 @@ (define-public python-pynbody
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1lwjs8vf3pc4a64c93fa5k6r276g1c60722swns2r10ig1s4wk0a"))
+        (base32 "175i99zwnnwglndr71paiadrx3xq3icxjgdqfv3xxpyn7fx4dzab"))
        (modules '((guix build utils)))
        (snippet
         ;; Symlink goes to not existing directory.
@@ -3572,6 +3572,7 @@ (define-public python-pynbody
                            ;;    https://github.com/pynbody/pynbody/blob/ \
                            ;;    f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \
                            ;;    .github/workflows/build-test.yaml#L41
+                           "--ignore=tests/copy_on_access_test.py"
                            "--ignore=tests/gravity_test.py"
                            "--ignore=tests/adaptahop_test.py"
                            "--ignore=tests/ahf_halos_test.py"
-- 
2.41.0

[bug#67915] [PATCH 18/32] gnu: python-radio-beam: Update to 0.3.7.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-radio-beam): Update to 0.3.7.

Change-Id: If767386ad3010bda9a25b4c575bc130e22d56f3b
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 6df6416e7d..0f206d1ed3 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4174,13 +4174,13 @@ (define-public python-rad
 (define-public python-radio-beam
   (package
     (name "python-radio-beam")
-    (version "0.3.6")
+    (version "0.3.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "radio-beam" version))
        (sha256
-        (base32 "19c6gmm1wvyp5nn1yfbzl428rkysdq273j2yaarxpivv7cwj7qjk"))))
+        (base32 "0dg6vqdhmzh47awdkkcbf455gw6if2qwxyhcqbq2dkhbwsx680gc"))))
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-astropy
-- 
2.41.0

[bug#67915] [PATCH 19/32] gnu: python-regions: Update to 0.8.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-regions): Update to 0.8.
[propagated-inputs]: Add python-h5py, python-matplotlib, python-scipy, and python-shapely.

Change-Id: Icdbbad92a0829d285962f50338e970d3a0d7eaa0
---
 gnu/packages/astronomy.scm | 11 ++++++++---
 1 file changed, 8 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0f206d1ed3..d2b6d43b78 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2276,13 +2276,13 @@ (define-public python-pyvo
 (define-public python-regions
   (package
     (name "python-regions")
-    (version "0.7")
+    (version "0.8")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "regions" version))
        (sha256
-        (base32 "08wsg9kxnki5pz8gdp81bq06jdmsip382fl02rvnr96cvzr7wf3m"))))
+        (base32 "09401pz7926zlci7cznd78hmv9947f6jxyy2afqdqc1xaccpzcq2"))))
     (build-system python-build-system)
     (arguments
      `(#:test-target "pytest"
@@ -2299,7 +2299,12 @@ (define-public python-regions
          (add-before 'check 'writable-home
            (lambda _  (setenv "HOME" (getcwd)))))))
     (propagated-inputs
-     (list python-astropy python-numpy))
+     (list python-astropy
+           python-h5py
+           python-matplotlib
+           python-numpy
+           python-scipy
+           python-shapely))
     (native-inputs
      (list python-cython
            python-extension-helpers
-- 
2.41.0

[bug#67915] [PATCH 20/32] gnu: python-reproject: Update to 0.13.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-reproject): Update to 0.13.0.

Change-Id: Id7dea0bc9c5bd7c3e65baad26b72a94d77c31165
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d2b6d43b78..49e7e64353 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2320,13 +2320,13 @@ (define-public python-regions
 (define-public python-reproject
   (package
     (name "python-reproject")
-    (version "0.12.0")
+    (version "0.13.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "reproject" version))
        (sha256
-        (base32 "1cjdfv7wd4c0ia63vqakxf9w8hd5dfz6jzi520scd37rliy1xgld"))))
+        (base32 "1qkjbx8xsawhi1gjzqimais3crvkwgbzy1pr51x6anjjln88rgll"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 21/32] gnu: python-spectral-cube: Update to 0.6.5.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-spectral-cube): Update to 0.6.5.

Change-Id: I089f55238299533f35d1fd7623c1a8ff446de08c
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 49e7e64353..9012f758d6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2548,13 +2548,13 @@ (define-public python-astral
 (define-public python-spectral-cube
   (package
     (name "python-spectral-cube")
-    (version "0.6.3")
+    (version "0.6.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "spectral-cube" version))
        (sha256
-        (base32 "10q76rsgf9w4j7y68mfa870bpxf06m6kqvivj4340jmgnsrfy1zg"))))
+        (base32 "0cqxgmk46gv2qa2kls8fph105lgwbwf13hvizh6w85mzgypyp740"))))
     (build-system pyproject-build-system)
     (propagated-inputs
      (list python-astropy
-- 
2.41.0

[bug#67915] [PATCH 22/32] gnu: python-spherical-geometry: Update to 1.3.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-spherical-geometry): Update to 1.3.1.
[arguments]<#:phases>: Replace 'build-extension with
'prepare-test-environment phase which includes Pytest config set up to
prevent tests from failure.
[native-inputs]: Add python-pytest-astropy-header.
[home-page]: Correct it.

Change-Id: Ib49201f62c32555355df5821383ef416245d4d50
---
 gnu/packages/astronomy.scm | 17 ++++++++++-------
 1 file changed, 10 insertions(+), 7 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9012f758d6..cc1a78b90e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2602,9 +2602,7 @@ (define-public python-spectral-cube
 (define-public python-spherical-geometry
   (package
     (name "python-spherical-geometry")
-    ;; XXX: Can't be updated to the latest see:
-    ;; https://github.com/spacetelescope/spherical_geometry/issues/227
-    (version "1.2.22")
+    (version "1.3.1")
     (source
      (origin
        (method git-fetch)
@@ -2613,7 +2611,7 @@ (define-public python-spherical-geometry
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0kzcncqir4v7nhk9lxj9gxr32p3krkaqa58y2i4kksgxxy24qw4z"))))
+        (base32 "172f81h42jq6mv3gpx497z2nkhkx11w4pzmcqljcicri2zqj1m6g"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -2627,18 +2625,23 @@ (define-public python-spherical-geometry
               (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
               ;; Use our own libraries in place of bundles.
               (setenv "USE_SYSTEM_QD" "1")))
-          (add-before 'check 'build-extensions
+          (add-before 'check 'prepare-test-environment
             (lambda _
-              (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+              (invoke "python" "setup.py" "build_ext" "--inplace")
+              (call-with-output-file "pytest.ini"
+                (lambda (port)
+                  (format port "[pytest]
+python_files = test_*.py"))))))))
     (native-inputs
      (list python-pytest
+           python-pytest-astropy-header
            python-setuptools-scm))
     (inputs
      (list qd))
     (propagated-inputs
      (list python-astropy
            python-numpy))
-    (home-page "https://github.com/spacetelescope/tweakwcs")
+    (home-page "https://github.com/spacetelescope/spherical_geometry")
     (synopsis "Python astronimical package for handling spherical polygons")
     (description
      "The @code{spherical_geometry} library is a Python package for handling
-- 
2.41.0

[bug#67915] [PATCH 23/32] gnu: python-stdatamodels: Update to 1.9.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stdatamodels): Update to 1.9.0.

Change-Id: I02f774b144ee439bd139d98a482b63e21a6ddb94
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index cc1a78b90e..20f72af0f2 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2782,13 +2782,13 @@ (define-public python-stcal
 (define-public python-stdatamodels
   (package
     (name "python-stdatamodels")
-    (version "1.8.3")
+    (version "1.9.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "stdatamodels" version))
        (sha256
-        (base32 "0265xa9nrp6qp1z7v9kmnd3c8jc0dad2vzin657clk3rrsj2qll5"))))
+        (base32 "16hwhvd8bqm1cmkgcn1v43hp2cvf094fz954rxb6jv2xx6csic15"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 24/32] gnu: python-stsci-imagestats: Update to 1.8.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stsci-imagestats): Update to 1.8.0.

Change-Id: I7d1c869b3e52e862d0556abb18ba3b96ca49408a
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 20f72af0f2..00653efd70 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2681,13 +2681,13 @@ (define-public python-stsci-image
 (define-public python-stsci-imagestats
   (package
     (name "python-stsci-imagestats")
-    (version "1.6.3")
+    (version "1.8.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "stsci.imagestats" version))
               (sha256
                (base32
-                "14457izlbnks84dyza75ib3nvx2w8nhlqm9vc1zb7hbhknb5gjvw"))))
+                "01jqqrhcna0ghin48bbcza57d12371ny4l4pqws89irwdhd8xr0r"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ;No tests
-- 
2.41.0

[bug#67915] [PATCH 25/32] gnu: python-stsci-imagestats: Enable tests

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stsci-imagestats): Enable tests.
[arguments]<#:phases>: Add 'build-extensions phase.
[native-inputs]: Add python-pytest.

Change-Id: I8cb35fd083453d577eb6ad94f097502566c1bcee
---
 gnu/packages/astronomy.scm | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 00653efd70..1e4d54b2d4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2690,9 +2690,15 @@ (define-public python-stsci-imagestats
                 "01jqqrhcna0ghin48bbcza57d12371ny4l4pqws89irwdhd8xr0r"))))
     (build-system pyproject-build-system)
     (arguments
-     (list #:tests? #f)) ;No tests
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'build-extensions
+            (lambda _
+              ;; Cython extensions have to be built before running the tests.
+              (invoke "python" "setup.py" "build_ext" "--inplace"))))))
     (propagated-inputs (list python-numpy))
-    (native-inputs (list python-setuptools-scm))
+    (native-inputs (list python-pytest python-setuptools-scm))
     (home-page "https://stsciimagestats.readthedocs.io/en/latest/")
     (synopsis "Compute sigma-clipped statistics on data arrays")
     (description
-- 
2.41.0

[bug#67915] [PATCH 26/32] gnu: python-stsynphot: Update to 1.3.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-stsynphot): Update to 1.3.0.

Change-Id: I48f8a2b20036a97ba8a989c8929cdea42bb4cade
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1e4d54b2d4..9ba6dc3350 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2858,13 +2858,13 @@ (define-public python-stpipe
 (define-public python-stsynphot
   (package
     (name "python-stsynphot")
-    (version "1.2.0")
+    (version "1.3.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "stsynphot" version))
               (sha256
                (base32
-                "0qkdh47j84v7fzri7bmi1jcmggdqq0a8byamfm73d8mbz86v8sn4"))))
+                "15m3vy39mc7rh1mrxs8d2bs0bx5vv632m6wg8n15fqjzhadqy7j5"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 27/32] gnu: python-synphot: Update to 1.3.0.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-synphot): Update to 1.3.0.

Change-Id: I5d2c5bf00563780738f1f36af5920d6ae55b28c2
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9ba6dc3350..2fd7454977 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3742,13 +3742,13 @@ (define-public python-suntime
 (define-public python-synphot
   (package
     (name "python-synphot")
-    (version "1.2.1")
+    (version "1.3.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "synphot" version))
               (sha256
                (base32
-                "10kcdg2gqmi1w2hsjx9hfizwbff3kll10s68hys13nzh4i8b7cc4"))))
+                "0a54bfrx9aar66040324sw9qdjz5lg67y28sjsxhyv9h3gppc7c0"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.41.0

[bug#67915] [PATCH 28/32] gnu: python-synphot: Adjust package style.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-synphot): Adjust package style.
[propagated-inputs]: Add annotation for optional, not packed yet
packages. Columnise inputs.
[native-inputs]: Columnise inputs.

Change-Id: I789fc143191c68d5acc248bf6c67e52a93e2744f
---
 gnu/packages/astronomy.scm | 25 ++++++++++++++++---------
 1 file changed, 16 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2fd7454977..75912cefb1 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3743,12 +3743,12 @@ (define-public python-synphot
   (package
     (name "python-synphot")
     (version "1.3.0")
-    (source (origin
-              (method url-fetch)
-              (uri (pypi-uri "synphot" version))
-              (sha256
-               (base32
-                "0a54bfrx9aar66040324sw9qdjz5lg67y28sjsxhyv9h3gppc7c0"))))
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "synphot" version))
+       (sha256
+        (base32 "0a54bfrx9aar66040324sw9qdjz5lg67y28sjsxhyv9h3gppc7c0"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3767,9 +3767,16 @@ (define-public python-synphot
                 (lambda (port)
                   (format port "[pytest]
 python_files = test_*.py"))))))))
-    (propagated-inputs (list python-astropy python-numpy python-scipy))
-    (native-inputs (list python-pytest python-pytest-astropy
-                         python-setuptools-scm))
+    (propagated-inputs
+     (list ;; python-dust-extinction ; XXX: Not packed yet, optional.
+           ;; python-specutils       ; XXX: Not packed yet, optional.
+           python-astropy
+           python-numpy
+           python-scipy))
+    (native-inputs
+     (list python-pytest
+           python-pytest-astropy
+           python-setuptools-scm))
     (home-page "https://github.com/spacetelescope/synphot_refactor")
     (synopsis "Synthetic photometry using Astropy")
     (description
-- 
2.41.0

[bug#67915] [PATCH 29/32] gnu: python-tweakwcs: Update to 0.8.5.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-tweakwcs): Update to 0.8.5.

Change-Id: I137077392d102c65489705d30a1820fc7923aac3
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 75912cefb1..9f621d5ace 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3788,13 +3788,13 @@ (define-public python-synphot
 (define-public python-tweakwcs
   (package
     (name "python-tweakwcs")
-    (version "0.8.3")
+    (version "0.8.5")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "tweakwcs" version))
               (sha256
                (base32
-                "09bd8b77rpn641cwmkhcyzx43xkx3va83wdcb47wcqqa7qgx9f1m"))))
+                "15gc2rc2isx3va6wbn4k1hi5qh49gq15cgbb2qqkbznd7f7d5ifv"))))
     (build-system pyproject-build-system)
     (propagated-inputs (list python-astropy
                              python-gwcs
-- 
2.41.0

[bug#67915] [PATCH 30/32] gnu: splash: Update to 3.10.1.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (splash): Update to 3.10.1.

Change-Id: I68a3eb0c1033a1e2726c6c2c4b6768d87d3fb4be
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9f621d5ace..9e51c015ec 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1120,7 +1120,7 @@ (define-public siril
 (define-public splash
   (package
     (name "splash")
-    (version "3.9.0")
+    (version "3.10.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1128,7 +1128,7 @@ (define-public splash
                     (commit (string-append "v" version))))
               (sha256
                (base32
-                "19r5j4jrxhp3gf865ns59vvfnn5a303dqgmb8y2kgcsx26fci1hs"))
+                "1cyg7my2lbpai81nfnlj0r7pvral3kjn31dcq2p4982d2xg0dj87"))
               (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
-- 
2.41.0

[bug#67915] [PATCH 31/32] gnu: wcslib: Update to 8.2.2.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (wcslib): Update to 8.2.2.

Change-Id: Id5ae03974956fe90b4970c1e879fd670c7b537dd
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9e51c015ec..76c60ca0a7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -757,14 +757,14 @@ (define-public eye
 (define-public wcslib
   (package
     (name "wcslib")
-    (version "8.1")
+    (version "8.2.2")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://www.atnf.csiro.au/people/mcalabre/WCS/"
                            "wcslib-" version ".tar.bz2"))
        (sha256
-        (base32 "17hjnkwn2rd5d9krw2n637q4y8ma4nzk2i55zzn8l2yimdpkxwib"))
+        (base32 "0cvqppjf7gk0f3rs9cc46h5fffv2l8ylrb234r9fbx0px0525632"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "C/flexed")))))
-- 
2.41.0

[bug#67915] [PATCH 32/32] gnu: python-regions: Use G-expressions.

[Sharlatan Hellseher]

* gnu/packages/astronomy.scm (python-regions): Use G-expressions.
[build-system]: Swap to pyproject-build-system.
[arguments]<#:phases>: Remove 'delete-doctest phase. Merge all
(add-before 'check ...) phases into 'prepare-test-environment.

Change-Id: I31dc6a195a6f6f818303d5c0e32799770cd448c8
---
 gnu/packages/astronomy.scm | 27 +++++++++++++--------------
 1 file changed, 13 insertions(+), 14 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 76c60ca0a7..9b842621ee 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2283,21 +2283,20 @@ (define-public python-regions
        (uri (pypi-uri "regions" version))
        (sha256
         (base32 "09401pz7926zlci7cznd78hmv9947f6jxyy2afqdqc1xaccpzcq2"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
     (arguments
-     `(#:test-target "pytest"
-       #:phases
-       (modify-phases %standard-phases
-         ;; This doctest requires online data.
-         (add-after 'unpack 'delete-doctest
-           (lambda _ (delete-file "docs/masks.rst")))
-         ;; This file is opened in both install and check phases.
-         (add-before 'install 'writable-compiler
-           (lambda _ (make-file-writable "regions/_compiler.c")))
-         (add-before 'check 'writable-compiler
-           (lambda _ (make-file-writable "regions/_compiler.c")))
-         (add-before 'check 'writable-home
-           (lambda _  (setenv "HOME" (getcwd)))))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; This file is opened in both install and check phases.
+          ;; XXX: Check if it is still required.
+          (add-before 'install 'writable-compiler
+            (lambda _ (make-file-writable "regions/_compiler.c")))
+          (add-before 'check 'prepare-test-environment
+            (lambda _
+              (setenv "HOME" "/tmp")
+              (make-file-writable "regions/_compiler.c")
+              (invoke "python" "setup.py" "build_ext" "--inplace"))))))
     (propagated-inputs
      (list python-astropy
            python-h5py
-- 
2.41.0

[bug#67915]

[Sharlatan Hellseher]

[-- Attachment #1: Type: text/plain, Size: 202 bytes --]

Hi Guix!

Happy New Year!

A gentle ping on this patch series from Dismember 2023.

I'm working on updating astropy and sunpy which requires
more packages and resolving some build issues.

Thanks,
Oleg

[-- Attachment #2: Type: text/html, Size: 457 bytes --]

[bug#67915]

[Sharlatan Hellseher]

[-- Attachment #1: Type: text/plain, Size: 432 bytes --]

Hi,

I would like to prepare an update for this month, please let me know if the
patch series needs any adjustment.

Thanks,
Oleg

On Mon, 1 Jan 2024, 11:58 Sharlatan Hellseher, <sharlatanus@gmail.com>
wrote:

> Hi Guix!
>
> Happy New Year!
>
> A gentle ping on this patch series from Dismember 2023.
>
> I'm working on updating astropy and sunpy which requires
> more packages and resolving some build issues.
>
> Thanks,
> Oleg
>

[-- Attachment #2: Type: text/html, Size: 1043 bytes --]

[bug#67915]

[Ricardo Wurmus]

Hi,

thank you for your patience!

> I would like to prepare an update for this month, please let me know
> if the patch series needs any adjustment.

This patch series looks pretty good to me, thank you!

Note that I have been working on a few updates to Python science
packages in the wip-python-science branch.  Just in case you’d need to
add packages that are already found on that branch.

Please ping me when you have your update ready and I’ll merge it ASAP.
Would be a shame to have this series delayed any further.

Thanks!

-- 
Ricardo

[bug#67915]

[Sharlatan Hellseher]

Hi Ricardo,

I've cheery picked  commits for astronomy and applied on
wip-python-science branch

origin/wip-python-science 9fb30db770e7cb2c2b7703176791e000cfbf7e86

Everything is still building successfully.

If you may push #67915 patch series covering state of astronomy packages from
2023/12, and I'll start preparing updates for 2024/01 maybe after
wip-python-science is merge.

Thanks,
Oleg

./pre-inst-env guix build --rounds=2 aocommon aoflagger calceph cfitsio
julia-fitsio libpasastro phd2 python-asdf-astropy python-astropy-healpix
python-crds python-drizzle python-drms python-gwcs python-jplephem
python-mpl-animators python-photutils python-pynbody python-radio-beam
python-regions python-reproject python-spectral-cube python-spherical-geometry
python-stdatamodels python-stsci-imagestats python-stsynphot python-synphot
python-tweakwcs splash wcslib

/gnu/store/0d6iz1ia0ypx45j51cdlzr9r4gzm4nb6-wcslib-8.2.2
/gnu/store/84yss6l62sgq8n2qwlvwg8hdz0ryliw1-splash-3.10.1
/gnu/store/zpm1anw9cnzak5wx5dlbzaz496pcv2bx-python-tweakwcs-0.8.5
/gnu/store/a4jiz4b7ajwi9yzcgpn61g7plwjyb7r6-python-synphot-1.3.0
/gnu/store/332anrzidj55qanrzakckvxdbd3nyrhh-python-stsynphot-1.3.0
/gnu/store/algddr41kvg0bqabxq2sjgcx4bmiq55g-python-stsci-imagestats-1.8.0
/gnu/store/2cc02kbyww7i1znmn5017c0nv5q3lwkf-python-stdatamodels-1.9.0
/gnu/store/q83n7bpr63fgjmjnkgy85d68ydx8n7fb-python-spherical-geometry-1.3.1
/gnu/store/73cnzmdmi932hapm1rd9lajv3sbdb00r-python-spectral-cube-0.6.5
/gnu/store/3mmfxm8b391hy7gk2i3fgw8khv82vb17-python-reproject-0.13.0
/gnu/store/a9b23558skk3lwz3spq3akp76mfn9vcg-python-regions-0.8
/gnu/store/syc6x9sz181vp3mq58qspg0md29sjffs-python-radio-beam-0.3.7
/gnu/store/1dzcmwszcbbwz8d9nycflzwh3s32g1x9-python-pynbody-1.5.2
/gnu/store/m5qb63ki7ijnwjd95knwxim6rsrdd26w-python-photutils-1.10.0
/gnu/store/c8ia403dnnc5av2fh096c2zil7y73h9r-python-mpl-animators-1.1.1
/gnu/store/lwya6fz2x2s2z2p937x1yjhnjpr8p5b3-python-jplephem-2.21
/gnu/store/iyzr2qdd0v90r6f71qrz3yhqrrqlnsi4-python-gwcs-0.20.0
/gnu/store/wknw241nxav6xq4z4qx5qjm04gj677bg-python-drms-0.7.0
/gnu/store/yp3qb8779nkd0d6znmfcap5l56dvxy56-python-drizzle-1.14.4
/gnu/store/afgb6f7mc4ryyj0x70pf5fvnqnp09286-python-crds-11.17.13
/gnu/store/69kn0i4i62xrrjmz1c6kygnlzwpv8pi0-python-astropy-healpix-1.0.2
/gnu/store/a96n317jz7853w4lr9dq0m6gq15ddby7-python-asdf-astropy-0.5.0
/gnu/store/bzc2p8b07fdz318vcw1ghqwpzfx4sv9w-phd2-2.6.12
/gnu/store/lsh4hiya5z84y0cw2l67bhg8mpfp4rz5-libpasastro-1.4.2
/gnu/store/yq7ig09gm16vik0hisrlj82xsvwcd3sc-julia-fitsio-0.17.1
/gnu/store/a06x6j0ygxz2sr8phy163gp105s9g74m-cfitsio-4.3.1
/gnu/store/az5mgwk016fcf8lc1w2lrld9l8f8sckc-calceph-3.5.4
/gnu/store/2pncaqvc1nz5zzn2axih24glxvvlj86g-aoflagger-3.4.0
/gnu/store/jjipsfd9x1p81wmrfb2qlz8sigy2pzm2-aocommon-0.0.0-2.9272ea3

On Wed, 10 Jan 2024 at 09:32, Ricardo Wurmus <rekado@elephly.net> wrote:
>
>
> Hi,
>
> thank you for your patience!
>
> > I would like to prepare an update for this month, please let me know
> > if the patch series needs any adjustment.
>
> This patch series looks pretty good to me, thank you!
>
> Note that I have been working on a few updates to Python science
> packages in the wip-python-science branch.  Just in case you’d need to
> add packages that are already found on that branch.
>
> Please ping me when you have your update ready and I’ll merge it ASAP.
> Would be a shame to have this series delayed any further.
>
> Thanks!
>
> --
> Ricardo



-- 

… наш разум - превосходная объяснительная машина которая способна
найти смысл почти в чем угодно, истолковать любой феномен, но
совершенно не в состоянии принять мысль о непредсказуемости.

[bug#67915]

[Ricardo Wurmus]

Hi,

> I've cheery picked  commits for astronomy and applied on
> wip-python-science branch
>
> origin/wip-python-science 9fb30db770e7cb2c2b7703176791e000cfbf7e86

I’m very sorry: I recreated the branch to rebase it on master.  I didn’t
realize you would push to the branch.

If you still have a copy of your changes, could you please rebase them
and push them again?  Sorry about this.

-- 
Ricardo

bug#67915:

[Sharlatan Hellseher]

Hi!

Thanks for feedback, pushing to master branch as my first proper patch series :)
Commit: bfdcf6b36578ac0567f7e06651375d74688d22e5

--
VCS: https://github.incerto.xyz/; https://git.sr.ht/~hellseher/
GPG: 9847 81DE 689C 21C2 6418 0867 76D7 27BF F62C D2B5

… наш разум - превосходная объяснительная машина которая способна
найти смысл почти в чем угодно, истолковать любой феномен, но
совершенно не в состоянии принять мысль о непредсказуемости.