From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: 65499@debbugs.gnu.org
Cc: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Subject: [bug#65499] [PATCH 1/2] gnu: Add r-bumpymatrix.
Date: Thu, 24 Aug 2023 13:28:27 +0000 [thread overview]
Message-ID: <c6cead75b569c3dd196e91ff76d557f8969f9a41.1692883708.git.navid.afkhami@mdc-berlin.de> (raw)
* gnu/packages/bioconductor.scm (r-bumpymatrix): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 74071900a3..6204173277 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12913,6 +12913,33 @@ (define-public r-siggenes
Bayes Analyses of Microarrays} (EBAM).")
(license license:lgpl2.0+)))
+(define-public r-bumpymatrix
+ (package
+ (name "r-bumpymatrix")
+ (version "1.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BumpyMatrix" version))
+ (sha256
+ (base32
+ "021xn5d08phmwv6g8a5d4ap5kcf5syhm6vpr784l4k54lflssr5i"))))
+ (properties `((upstream-name . "BumpyMatrix")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-iranges r-matrix r-s4vectors))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/BumpyMatrix")
+ (synopsis "Bumpy matrix of non-scalar objects")
+ (description
+ "
+@code{BumpyMatrix} class and subclasses for storing non-scalar objects in matrix entries.
+This is akin to a ragged array but the raggedness is in the third dimension,
+much like a bumpy surface - hence the name. Of particular interest is the
+@code{BumpyDataFrameMatrix,} where each entry is a Bioconductor data frame.
+This allows us to naturally represent multivariate data in a format that is
+compatible with two-dimensional containers like the @code{SummarizedExperiment}
+and @code{MultiAssayExperiment} objects.")
+ (license license:expat)))
+
(define-public r-bumphunter
(package
(name "r-bumphunter")
base-commit: 39fa1ef033fda82cb1d122e0d1675b51acb1db34
--
2.34.1
next reply other threads:[~2023-08-24 13:29 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-08-24 13:28 Navid Afkhami [this message]
2023-08-24 13:28 ` [bug#65500] [PATCH 2/2] gnu: Add r-mousegastrulationdata Navid Afkhami
2023-08-28 8:20 ` bug#65500: " Ricardo Wurmus
2023-08-28 8:20 ` bug#65499: [PATCH 1/2] gnu: Add r-bumpymatrix Ricardo Wurmus
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