unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: Navid Afkhami <navid.afkhami@mdc-berlin.de>
To: 65500@debbugs.gnu.org
Cc: Navid Afkhami <navid.afkhami@mdc-berlin.de>
Subject: [bug#65500] [PATCH 2/2] gnu: Add r-mousegastrulationdata.
Date: Thu, 24 Aug 2023 13:28:28 +0000	[thread overview]
Message-ID: <feee7c4944e8282a6f8b848dc17bff2993b8ff56.1692883708.git.navid.afkhami@mdc-berlin.de> (raw)
In-Reply-To: <c6cead75b569c3dd196e91ff76d557f8969f9a41.1692883708.git.navid.afkhami@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable.
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6204173277..f3671e5cca 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8009,6 +8009,37 @@ (define-public r-motifrg
 throughput genetic sequencing data sets using regression methods.")
     (license license:artistic2.0)))
 
+(define-public r-mousegastrulationdata
+  (package
+    (name "r-mousegastrulationdata")
+    (version "1.14.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "MouseGastrulationData" version
+                                     'experiment))
+              (sha256
+               (base32
+                "155kci5isq7mlbvv8mdl2jjpafm3pbv1likhls70aa746spr1h17"))))
+    (properties `((upstream-name . "MouseGastrulationData")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biocgenerics
+                             r-bumpymatrix
+                             r-experimenthub
+                             r-s4vectors
+                             r-singlecellexperiment
+                             r-spatialexperiment
+                             r-summarizedexperiment))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/MarioniLab/MouseGastrulationData")
+    (synopsis
+     "Single-Cell omics data across mouse gastrulation and early organogenesis")
+    (description
+     "This package provides processed and raw count data for single-cell RNA sequencing.
+in addition, this package offers single-cell ATAC-seq, and @code{seqFISH}
+(spatial transcriptomic) experiments performed along a timecourse of mouse
+gastrulation and early organogenesis.")
+    (license license:gpl3)))
+
 (define-public r-muscat
   (package
     (name "r-muscat")
-- 
2.34.1





  reply	other threads:[~2023-08-24 13:30 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2023-08-24 13:28 [bug#65499] [PATCH 1/2] gnu: Add r-bumpymatrix Navid Afkhami
2023-08-24 13:28 ` Navid Afkhami [this message]
2023-08-28  8:20   ` bug#65500: [PATCH 2/2] gnu: Add r-mousegastrulationdata Ricardo Wurmus
2023-08-28  8:20 ` bug#65499: [PATCH 1/2] gnu: Add r-bumpymatrix Ricardo Wurmus

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=feee7c4944e8282a6f8b848dc17bff2993b8ff56.1692883708.git.navid.afkhami@mdc-berlin.de \
    --to=navid.afkhami@mdc-berlin.de \
    --cc=65500@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).