* [bug#66515] [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38.
@ 2023-10-13 12:12 Afkhami, Navid
2023-10-13 12:49 ` bug#66515: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Afkhami, Navid @ 2023-10-13 12:12 UTC (permalink / raw)
To: 66515; +Cc: Afkhami, Navid
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f6946b72c8..c3e65dda56 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1711,6 +1711,36 @@ (define-public r-italicsdata
;; Expanded from GPL
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-mafh5-gnomad-v3-1-2-grch38
+ (package
+ (name "r-mafh5-gnomad-v3-1-2-grch38")
+ (version "3.15.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MafH5.gnomAD.v3.1.2.GRCh38" version
+ 'annotation))
+ (sha256
+ (base32 "18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq"))))
+ (properties `((upstream-name . "MafH5.gnomAD.v3.1.2.GRCh38")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bsgenome
+ r-genomeinfodb
+ r-genomicranges
+ r-genomicscores
+ r-hdf5array
+ r-iranges
+ r-rhdf5
+ r-s4vectors))
+ (home-page "https://bioconductor.org/packages/MafH5.gnomAD.v3.1.2.GRCh38")
+ (synopsis
+ "Minor allele frequency data from gnomAD version 3.1.2 for GRCh38")
+ (description
+ "This package is designed to store minor allele frequency data.
+It retrieves this data from the Genome Aggregation Database
+(@code{gnomAD} version 3.1.2) for the human genome version GRCh38.")
+ (license license:artistic2.0)))
+
(define-public r-macrophage
(package
(name "r-macrophage")
base-commit: 844dd7dac76fa491a052df1d117a5d817cc8087c
--
2.34.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#66515: [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38.
2023-10-13 12:12 [bug#66515] [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38 Afkhami, Navid
@ 2023-10-13 12:49 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2023-10-13 12:49 UTC (permalink / raw)
To: 66515-done
Applied after moving to annotation section.
Thank you!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
end of thread, other threads:[~2023-10-13 12:52 UTC | newest]
Thread overview: 2+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2023-10-13 12:12 [bug#66515] [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38 Afkhami, Navid
2023-10-13 12:49 ` bug#66515: " Ricardo Wurmus
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).