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envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US X-Spam-Score: 3.92 X-Migadu-Queue-Id: 056BE6D543 X-Migadu-Scanner: mx0.migadu.com X-Migadu-Spam-Score: 3.92 X-TUID: QpI2tuj3P1mS * gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f6946b72c8..c3e65dda56 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1711,6 +1711,36 @@ (define-public r-italicsdata ;; Expanded from GPL (license (list license:gpl2+ license:gpl3+)))) +(define-public r-mafh5-gnomad-v3-1-2-grch38 + (package + (name "r-mafh5-gnomad-v3-1-2-grch38") + (version "3.15.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MafH5.gnomAD.v3.1.2.GRCh38" version + 'annotation)) + (sha256 + (base32 "18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq")))) + (properties `((upstream-name . "MafH5.gnomAD.v3.1.2.GRCh38"))) + (build-system r-build-system) + (propagated-inputs (list r-bsgenome + r-genomeinfodb + r-genomicranges + r-genomicscores + r-hdf5array + r-iranges + r-rhdf5 + r-s4vectors)) + (home-page "https://bioconductor.org/packages/MafH5.gnomAD.v3.1.2.GRCh38") + (synopsis + "Minor allele frequency data from gnomAD version 3.1.2 for GRCh38") + (description + "This package is designed to store minor allele frequency data. +It retrieves this data from the Genome Aggregation Database +(@code{gnomAD} version 3.1.2) for the human genome version GRCh38.") + (license license:artistic2.0))) + (define-public r-macrophage (package (name "r-macrophage") base-commit: 844dd7dac76fa491a052df1d117a5d817cc8087c -- 2.34.1