* [bug#40696] Status: New package 'r-bridgesampling"
2020-04-18 11:14 [bug#40696] New package 'r-bridgesampling" Eric Brown
@ 2020-04-19 19:21 ` Eric Brown
2020-04-22 11:59 ` bug#40696: " Ricardo Wurmus
0 siblings, 1 reply; 3+ messages in thread
From: Eric Brown @ 2020-04-19 19:21 UTC (permalink / raw)
To: bug#40696
[-- Attachment #1: Type: text/plain, Size: 3069 bytes --]
bug#40696 <40696@debbugs.gnu.org> writes:
> retitle 40696 New package 'r-bridgesampling"
> reassign 40696 guix-patches
> submitter 40696 Eric Brown <ecbrown@ericcbrown.com>
> severity 40696 normal
>
> thanks
In response to rekado's observation that the first patch will not apply
to master, I have created a second patch to try.
From the feature branch I was developing on:
git format-patch master
From 152d58d7c813e6b16838ebccc450e6c53594e58a Mon Sep 17 00:00:00 2001
From: Eric Brown <ecbrown@ericcbrown.com>
Date: Sun, 19 Apr 2020 14:07:27 -0500
Subject: [PATCH] gnu: Add r-bridgesampling.
* gnu/packages/cran.scm (r-bridgesampling): New variable.
---
gnu/packages/cran.scm | 34 +++++++++++++++++++++++++++++++++-
1 file changed, 33 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 757f809941..f9e0686ccf 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14,13 +14,13 @@
;;; Copyright © 2018 Laura Lazzati <laura.lazzati.15@gmail.com>
;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
-;;; Copyright © 2018 Eric Brown <brown@fastmail.com>
;;; Copyright © 2018, 2019 Brett Gilio <brettg@gnu.org>
;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com>
;;; Copyright © 2020 Danjela Lura <danielaluraa@gmail.com>
;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net>
+;;; Copyright © 2020 Eric Brown <ecbrown@ericcbrown.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -21131,3 +21131,35 @@ vignettes from notebooks. Those notebooks (@code{.ipynb} files) are files
containing rich text, code, and its output. Code cells can be edited and
evaluated interactively.")
(license license:gpl3)))
+
+(define-public r-bridgesampling
+ (package
+ (name "r-bridgesampling")
+ (version "1.0-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "bridgesampling" version))
+ (sha256
+ (base32
+ "1awhvv0v42w2q6llqi1wqpaiv5zx74cqzigdsvphy2jfp8ajw64y"))))
+ (properties
+ `((upstream-name . "bridgesampling")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-brobdingnag" ,r-brobdingnag)
+ ("r-coda" ,r-coda)
+ ("r-matrix" ,r-matrix)
+ ("r-mvtnorm" ,r-mvtnorm)
+ ("r-scales" ,r-scales)
+ ("r-stringr" ,r-stringr)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page
+ "https://github.com/quentingronau/bridgesampling")
+ (synopsis
+ "Bridge Sampling for Marginal Likelihoods and Bayes Factors")
+ (description
+ "This package provides functions for estimating marginal likelihoods,
+Bayes factors, posterior model probabilities, and normalizing constants in
+general, via different versions of bridge sampling.")
+ (license license:gpl2+)))
--
2.26.1
[-- Attachment #2: r-bridgesampling patch --]
[-- Type: text/x-patch, Size: 2642 bytes --]
From 152d58d7c813e6b16838ebccc450e6c53594e58a Mon Sep 17 00:00:00 2001
From: Eric Brown <ecbrown@ericcbrown.com>
Date: Sun, 19 Apr 2020 14:07:27 -0500
Subject: [PATCH] gnu: Add r-bridgesampling.
* gnu/packages/cran.scm (r-bridgesampling): New variable.
---
gnu/packages/cran.scm | 34 +++++++++++++++++++++++++++++++++-
1 file changed, 33 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 757f809941..f9e0686ccf 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14,13 +14,13 @@
;;; Copyright © 2018 Laura Lazzati <laura.lazzati.15@gmail.com>
;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
-;;; Copyright © 2018 Eric Brown <brown@fastmail.com>
;;; Copyright © 2018, 2019 Brett Gilio <brettg@gnu.org>
;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com>
;;; Copyright © 2020 Danjela Lura <danielaluraa@gmail.com>
;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net>
+;;; Copyright © 2020 Eric Brown <ecbrown@ericcbrown.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -21131,3 +21131,35 @@ vignettes from notebooks. Those notebooks (@code{.ipynb} files) are files
containing rich text, code, and its output. Code cells can be edited and
evaluated interactively.")
(license license:gpl3)))
+
+(define-public r-bridgesampling
+ (package
+ (name "r-bridgesampling")
+ (version "1.0-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "bridgesampling" version))
+ (sha256
+ (base32
+ "1awhvv0v42w2q6llqi1wqpaiv5zx74cqzigdsvphy2jfp8ajw64y"))))
+ (properties
+ `((upstream-name . "bridgesampling")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-brobdingnag" ,r-brobdingnag)
+ ("r-coda" ,r-coda)
+ ("r-matrix" ,r-matrix)
+ ("r-mvtnorm" ,r-mvtnorm)
+ ("r-scales" ,r-scales)
+ ("r-stringr" ,r-stringr)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page
+ "https://github.com/quentingronau/bridgesampling")
+ (synopsis
+ "Bridge Sampling for Marginal Likelihoods and Bayes Factors")
+ (description
+ "This package provides functions for estimating marginal likelihoods,
+Bayes factors, posterior model probabilities, and normalizing constants in
+general, via different versions of bridge sampling.")
+ (license license:gpl2+)))
--
2.26.1
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