From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:470:142:3::10]:35214 helo=eggs1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1jQGS3-0008SX-Or for guix-patches@gnu.org; Sun, 19 Apr 2020 16:22:04 -0400 Received: from Debian-exim by eggs1p.gnu.org with spam-scanned (Exim 4.90_1) (envelope-from ) id 1jQGS2-0004ZY-Vy for guix-patches@gnu.org; Sun, 19 Apr 2020 16:22:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:34523) by eggs1p.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1jQGS2-0004ZR-JH for guix-patches@gnu.org; Sun, 19 Apr 2020 16:22:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1jQGS2-0007vh-Fu for guix-patches@gnu.org; Sun, 19 Apr 2020 16:22:02 -0400 Subject: [bug#40696] Status: New package 'r-bridgesampling" References: <87mu79cag0.fsf@ericcbrown.com> Resent-Message-ID: From: Eric Brown In-Reply-To: bug's message of "Sun\, 19 Apr 2020 19\:15\:11 +0000" Date: Sun, 19 Apr 2020 14:21:16 -0500 Message-ID: <874ktfcmdv.fsf@ericcbrown.com> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: bug#40696 <40696@debbugs.gnu.org> --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable bug#40696 <40696@debbugs.gnu.org> writes: > retitle 40696 New package 'r-bridgesampling" > reassign 40696 guix-patches > submitter 40696 Eric Brown > severity 40696 normal > > thanks In response to rekado's observation that the first patch will not apply to master, I have created a second patch to try. >From the feature branch I was developing on: git format-patch master >From 152d58d7c813e6b16838ebccc450e6c53594e58a Mon Sep 17 00:00:00 2001 From: Eric Brown Date: Sun, 19 Apr 2020 14:07:27 -0500 Subject: [PATCH] gnu: Add r-bridgesampling. * gnu/packages/cran.scm (r-bridgesampling): New variable. --- gnu/packages/cran.scm | 34 +++++++++++++++++++++++++++++++++- 1 file changed, 33 insertions(+), 1 deletion(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 757f809941..f9e0686ccf 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14,13 +14,13 @@ ;;; Copyright =C2=A9 2018 Laura Lazzati ;;; Copyright =C2=A9 2018 Leo Famulari ;;; Copyright =C2=A9 2018 Marius Bakke -;;; Copyright =C2=A9 2018 Eric Brown ;;; Copyright =C2=A9 2018, 2019 Brett Gilio ;;; Copyright =C2=A9 2019 Nicol=C3=B2 Balzarotti ;;; Copyright =C2=A9 2019 Wiktor =C5=BBelazny ;;; Copyright =C2=A9 2020 Todor Kondi=C4=87 ;;; Copyright =C2=A9 2020 Danjela Lura ;;; Copyright =C2=A9 2020 Naga Malleswari +;;; Copyright =C2=A9 2020 Eric Brown ;;; ;;; This file is part of GNU Guix. ;;; @@ -21131,3 +21131,35 @@ vignettes from notebooks. Those notebooks (@code{= .ipynb} files) are files containing rich text, code, and its output. Code cells can be edited and evaluated interactively.") (license license:gpl3))) + +(define-public r-bridgesampling + (package + (name "r-bridgesampling") + (version "1.0-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "bridgesampling" version)) + (sha256 + (base32 + "1awhvv0v42w2q6llqi1wqpaiv5zx74cqzigdsvphy2jfp8ajw64y")))) + (properties + `((upstream-name . "bridgesampling"))) + (build-system r-build-system) + (propagated-inputs + `(("r-brobdingnag" ,r-brobdingnag) + ("r-coda" ,r-coda) + ("r-matrix" ,r-matrix) + ("r-mvtnorm" ,r-mvtnorm) + ("r-scales" ,r-scales) + ("r-stringr" ,r-stringr))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page + "https://github.com/quentingronau/bridgesampling") + (synopsis + "Bridge Sampling for Marginal Likelihoods and Bayes Factors") + (description + "This package provides functions for estimating marginal likelihoods, +Bayes factors, posterior model probabilities, and normalizing constants in +general, via different versions of bridge sampling.") + (license license:gpl2+))) --=20 2.26.1 --=-=-= Content-Type: text/x-patch; charset=utf-8 Content-Disposition: inline; filename=0001-gnu-Add-r-bridgesampling.patch Content-Transfer-Encoding: quoted-printable Content-Description: r-bridgesampling patch >From 152d58d7c813e6b16838ebccc450e6c53594e58a Mon Sep 17 00:00:00 2001 From: Eric Brown Date: Sun, 19 Apr 2020 14:07:27 -0500 Subject: [PATCH] gnu: Add r-bridgesampling. * gnu/packages/cran.scm (r-bridgesampling): New variable. --- gnu/packages/cran.scm | 34 +++++++++++++++++++++++++++++++++- 1 file changed, 33 insertions(+), 1 deletion(-) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 757f809941..f9e0686ccf 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14,13 +14,13 @@ ;;; Copyright =C2=A9 2018 Laura Lazzati ;;; Copyright =C2=A9 2018 Leo Famulari ;;; Copyright =C2=A9 2018 Marius Bakke -;;; Copyright =C2=A9 2018 Eric Brown ;;; Copyright =C2=A9 2018, 2019 Brett Gilio ;;; Copyright =C2=A9 2019 Nicol=C3=B2 Balzarotti ;;; Copyright =C2=A9 2019 Wiktor =C5=BBelazny ;;; Copyright =C2=A9 2020 Todor Kondi=C4=87 ;;; Copyright =C2=A9 2020 Danjela Lura ;;; Copyright =C2=A9 2020 Naga Malleswari +;;; Copyright =C2=A9 2020 Eric Brown ;;; ;;; This file is part of GNU Guix. ;;; @@ -21131,3 +21131,35 @@ vignettes from notebooks. Those notebooks (@code{= .ipynb} files) are files containing rich text, code, and its output. Code cells can be edited and evaluated interactively.") (license license:gpl3))) + +(define-public r-bridgesampling + (package + (name "r-bridgesampling") + (version "1.0-0") + (source + (origin + (method url-fetch) + (uri (cran-uri "bridgesampling" version)) + (sha256 + (base32 + "1awhvv0v42w2q6llqi1wqpaiv5zx74cqzigdsvphy2jfp8ajw64y")))) + (properties + `((upstream-name . "bridgesampling"))) + (build-system r-build-system) + (propagated-inputs + `(("r-brobdingnag" ,r-brobdingnag) + ("r-coda" ,r-coda) + ("r-matrix" ,r-matrix) + ("r-mvtnorm" ,r-mvtnorm) + ("r-scales" ,r-scales) + ("r-stringr" ,r-stringr))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page + "https://github.com/quentingronau/bridgesampling") + (synopsis + "Bridge Sampling for Marginal Likelihoods and Bayes Factors") + (description + "This package provides functions for estimating marginal likelihoods, +Bayes factors, posterior model probabilities, and normalizing constants in +general, via different versions of bridge sampling.") + (license license:gpl2+))) --=20 2.26.1 --=-=-=--