* [bug#63268] [PATCH] gnu: Add python-goatools.
@ 2023-05-04 14:56 Navid Afkhami
2023-05-04 17:23 ` bug#63268: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Navid Afkhami @ 2023-05-04 14:56 UTC (permalink / raw)
To: 63268; +Cc: Navid Afkhami
* gnu/packages/bioinformatics.scm (python-goatools): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7db8a91e80..db76d04594 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12337,6 +12337,37 @@ (define-public python-genomic-regions
using the same syntax.")
(license license:expat)))
+(define-public python-goatools
+ (package
+ (name "python-goatools")
+ (version "1.3.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "goatools" version))
+ (sha256
+ (base32
+ "1p53h7bnbmi23lcgsajf9vb8vxgjp6lmbz0hl1cx62230jvbfp62"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:tests? #f))
+ (propagated-inputs (list python-docopt
+ python-numpy
+ python-openpyxl
+ python-pandas
+ python-pydot
+ python-requests
+ python-scipy
+ python-statsmodels
+ python-xlsxwriter))
+ (home-page "https://github.com/tanghaibao/goatools")
+ (synopsis "Python scripts to find enrichment of GO terms")
+ (description "Python scripts to find enrichment of GO terms.
+In addition, this package is used for processing the
+obo-formatted file from Gene Ontology website. The
+data structure is a directed acyclic graph that allows
+easy traversal from leaf to root.")
+ (license license:bsd-3)))
+
(define-public python-loompy
(package
(name "python-loompy")
base-commit: f0a51a2bda26f9cc1e0b54b48712bd7cc54408e9
--
2.34.1
^ permalink raw reply related [flat|nested] 2+ messages in thread
* bug#63268: [PATCH] gnu: Add python-goatools.
2023-05-04 14:56 [bug#63268] [PATCH] gnu: Add python-goatools Navid Afkhami
@ 2023-05-04 17:23 ` Ricardo Wurmus
0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2023-05-04 17:23 UTC (permalink / raw)
To: 63268-done
Applied with a number of changes. Thank you!
--
Ricardo
^ permalink raw reply [flat|nested] 2+ messages in thread
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2023-05-04 14:56 [bug#63268] [PATCH] gnu: Add python-goatools Navid Afkhami
2023-05-04 17:23 ` bug#63268: " Ricardo Wurmus
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