* [bug#70336] [PATCH] gnu: Add python-libensemble.
@ 2024-04-11 9:42 Vinicius Monego
2024-04-15 22:35 ` Nicolas Graves via Guix-patches via
0 siblings, 1 reply; 3+ messages in thread
From: Vinicius Monego @ 2024-04-11 9:42 UTC (permalink / raw)
To: 70336; +Cc: Vinicius Monego
* gnu/packages/maths.scm (python-libensemble): New variable.
Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
---
gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++
1 file changed, 53 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 03760f3f3e..6f7e67329e 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -839,6 +839,59 @@ (define-public glpk-4
(base32
"040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2"))))))
+(define-public python-libensemble
+ (package
+ (name "python-libensemble")
+ (version "1.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "libensemble" version))
+ (sha256
+ (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk"))))
+ (build-system pyproject-build-system)
+ (native-inputs (list ncurses
+ python-mock
+ python-mpi4py
+ python-pytest
+ python-pytest-cov
+ python-pytest-timeout))
+ (propagated-inputs (list python-numpy
+ python-psutil
+ python-pydantic-2
+ python-pyyaml
+ python-tomli))
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'relax-psutil
+ (lambda _
+ (substitute* "setup.py"
+ (("psutil>=5.9.4") "psutil>=5.9.2"))))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ ;; These files require MPI and call subprocesses.
+ (delete-file
+ "libensemble/tests/unit_tests/test_executor.py")
+ (delete-file
+ "libensemble/tests/unit_tests/test_executor_gpus.py")
+ ;; Run only unit tests, regression tests require MPI.
+ (setenv "TERM" "xterm")
+ ;; A very bad way to skip another MPI test.
+ (substitute* "libensemble/tests/run-tests.sh"
+ (("export UNIT_TEST_MPI_SUBDIR=.*")
+ "export UNIT_TEST_MPI_SUBDIR=''"))
+ ;; Run the test script.
+ (invoke "bash" "libensemble/tests/run-tests.sh" "-u")))))))
+ (home-page "https://github.com/Libensemble/libensemble")
+ (synopsis "Toolkit for dynamic ensembles of calculations")
+ (description "@code{libensemble} is a a complete toolkit for dynamic
+ensembles of calculations. It connects @code{deciders} to experiments or
+simulations.")
+ (license license:bsd-3)))
+
(define-public linasm
(package
(name "linasm")
base-commit: 51de844a0ff6ea224367a384092896bce6848b9f
--
2.39.2
^ permalink raw reply related [flat|nested] 3+ messages in thread
* [bug#70336] [PATCH] gnu: Add python-libensemble.
2024-04-11 9:42 [bug#70336] [PATCH] gnu: Add python-libensemble Vinicius Monego
@ 2024-04-15 22:35 ` Nicolas Graves via Guix-patches via
2024-05-11 17:29 ` bug#70336: " Vinicius Monego
0 siblings, 1 reply; 3+ messages in thread
From: Nicolas Graves via Guix-patches via @ 2024-04-15 22:35 UTC (permalink / raw)
To: Vinicius Monego, 70336; +Cc: Vinicius Monego
On 2024-04-11 09:42, Vinicius Monego wrote:
> * gnu/packages/maths.scm (python-libensemble): New variable.
>
> Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
> ---
> gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++
> 1 file changed, 53 insertions(+)
>
> diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
> index 03760f3f3e..6f7e67329e 100644
> --- a/gnu/packages/maths.scm
> +++ b/gnu/packages/maths.scm
> @@ -839,6 +839,59 @@ (define-public glpk-4
> (base32
> "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2"))))))
>
> +(define-public python-libensemble
> + (package
> + (name "python-libensemble")
> + (version "1.2.2")
> + (source
> + (origin
> + (method url-fetch)
> + (uri (pypi-uri "libensemble" version))
> + (sha256
> + (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk"))))
> + (build-system pyproject-build-system)
> + (native-inputs (list ncurses
> + python-mock
> + python-mpi4py
> + python-pytest
> + python-pytest-cov
> + python-pytest-timeout))
> + (propagated-inputs (list python-numpy
> + python-psutil
> + python-pydantic-2
> + python-pyyaml
> + python-tomli))
> + (arguments
> + (list
> + #:phases
> + #~(modify-phases %standard-phases
> + (add-after 'unpack 'relax-psutil
> + (lambda _
> + (substitute* "setup.py"
> + (("psutil>=5.9.4") "psutil>=5.9.2"))))
> + (replace 'check
> + (lambda* (#:key tests? #:allow-other-keys)
> + (when tests?
> + ;; These files require MPI and call subprocesses.
> + (delete-file
> + "libensemble/tests/unit_tests/test_executor.py")
> + (delete-file
> + "libensemble/tests/unit_tests/test_executor_gpus.py")
> + ;; Run only unit tests, regression tests require MPI.
> + (setenv "TERM" "xterm")
> + ;; A very bad way to skip another MPI test.
> + (substitute* "libensemble/tests/run-tests.sh"
> + (("export UNIT_TEST_MPI_SUBDIR=.*")
> + "export UNIT_TEST_MPI_SUBDIR=''"))
> + ;; Run the test script.
> + (invoke "bash" "libensemble/tests/run-tests.sh" "-u")))))))
> + (home-page "https://github.com/Libensemble/libensemble")
> + (synopsis "Toolkit for dynamic ensembles of calculations")
> + (description "@code{libensemble} is a a complete toolkit for dynamic
Just a little typo here (double a), otherwise LGTM.
guix lint only complains on archival, but it's fine.
built and rebuilt.
> +ensembles of calculations. It connects @code{deciders} to experiments or
> +simulations.")
> + (license license:bsd-3)))
> +
> (define-public linasm
> (package
> (name "linasm")
>
> base-commit: 51de844a0ff6ea224367a384092896bce6848b9f
--
Best regards,
Nicolas Graves
^ permalink raw reply [flat|nested] 3+ messages in thread
* bug#70336: [PATCH] gnu: Add python-libensemble.
2024-04-15 22:35 ` Nicolas Graves via Guix-patches via
@ 2024-05-11 17:29 ` Vinicius Monego
0 siblings, 0 replies; 3+ messages in thread
From: Vinicius Monego @ 2024-05-11 17:29 UTC (permalink / raw)
To: Nicolas Graves, 70336-done
Em 15/04/2024 19:35, Nicolas Graves escreveu:
> On 2024-04-11 09:42, Vinicius Monego wrote:
>
>> * gnu/packages/maths.scm (python-libensemble): New variable.
>>
>> Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
>> ---
>> gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++
>> 1 file changed, 53 insertions(+)
>>
>> diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
>> index 03760f3f3e..6f7e67329e 100644
>> --- a/gnu/packages/maths.scm
>> +++ b/gnu/packages/maths.scm
>> @@ -839,6 +839,59 @@ (define-public glpk-4
>> (base32
>> "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2"))))))
>>
>> +(define-public python-libensemble
>> + (package
>> + (name "python-libensemble")
>> + (version "1.2.2")
>> + (source
>> + (origin
>> + (method url-fetch)
>> + (uri (pypi-uri "libensemble" version))
>> + (sha256
>> + (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk"))))
>> + (build-system pyproject-build-system)
>> + (native-inputs (list ncurses
>> + python-mock
>> + python-mpi4py
>> + python-pytest
>> + python-pytest-cov
>> + python-pytest-timeout))
>> + (propagated-inputs (list python-numpy
>> + python-psutil
>> + python-pydantic-2
>> + python-pyyaml
>> + python-tomli))
>> + (arguments
>> + (list
>> + #:phases
>> + #~(modify-phases %standard-phases
>> + (add-after 'unpack 'relax-psutil
>> + (lambda _
>> + (substitute* "setup.py"
>> + (("psutil>=5.9.4") "psutil>=5.9.2"))))
>> + (replace 'check
>> + (lambda* (#:key tests? #:allow-other-keys)
>> + (when tests?
>> + ;; These files require MPI and call subprocesses.
>> + (delete-file
>> + "libensemble/tests/unit_tests/test_executor.py")
>> + (delete-file
>> + "libensemble/tests/unit_tests/test_executor_gpus.py")
>> + ;; Run only unit tests, regression tests require MPI.
>> + (setenv "TERM" "xterm")
>> + ;; A very bad way to skip another MPI test.
>> + (substitute* "libensemble/tests/run-tests.sh"
>> + (("export UNIT_TEST_MPI_SUBDIR=.*")
>> + "export UNIT_TEST_MPI_SUBDIR=''"))
>> + ;; Run the test script.
>> + (invoke "bash" "libensemble/tests/run-tests.sh" "-u")))))))
>> + (home-page "https://github.com/Libensemble/libensemble")
>> + (synopsis "Toolkit for dynamic ensembles of calculations")
>> + (description "@code{libensemble} is a a complete toolkit for dynamic
> Just a little typo here (double a), otherwise LGTM.
> guix lint only complains on archival, but it's fine.
> built and rebuilt.
Pushed with that correction and an update to 1.3.0, thanks.
^ permalink raw reply [flat|nested] 3+ messages in thread
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2024-04-11 9:42 [bug#70336] [PATCH] gnu: Add python-libensemble Vinicius Monego
2024-04-15 22:35 ` Nicolas Graves via Guix-patches via
2024-05-11 17:29 ` bug#70336: " Vinicius Monego
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