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Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-To: guix-patches@gnu.org Resent-Date: Sat, 11 May 2024 17:31:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: cc-closed 70336 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Nicolas Graves , 70336-done@debbugs.gnu.org Mail-Followup-To: 70336@debbugs.gnu.org, monego@posteo.net, monego@posteo.net Received: via spool by 70336-done@debbugs.gnu.org id=D70336.171544862315262 (code D ref 70336); Sat, 11 May 2024 17:31:01 +0000 Received: (at 70336-done) by debbugs.gnu.org; 11 May 2024 17:30:23 +0000 Received: from localhost ([127.0.0.1]:49453 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s5qYB-0003y6-0j for submit@debbugs.gnu.org; Sat, 11 May 2024 13:30:23 -0400 Received: from mout02.posteo.de ([185.67.36.66]:39169) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s5qY8-0003y0-Q5 for 70336-done@debbugs.gnu.org; Sat, 11 May 2024 13:30:22 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 0E967240104 for <70336-done@debbugs.gnu.org>; Sat, 11 May 2024 19:30:14 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1715448615; bh=UXamfRccIyLGHlDNGvPcumZcUrE+Hjni1RlCm/WnTHw=; h=Message-ID:Date:MIME-Version:Subject:To:From:Content-Type: Content-Transfer-Encoding:From; b=C1DTnueYJFGp+5TTIDfgl1eA49LmOQRfM2xbpPwoQvNkogYaHAXWmOwa6qk7JV9mh 8nylT8Y3AruBRlYzykSQL6LxUEPPQv1WR+oBM//oF0+BAIPELoiwtHHCFKWDdhf1je 4EyRBrwfe9Wk6zXTSu5nlDF9QwnG2evGu/kSJtnZ0DOrLWylNi5/aNdQE7475s/GWx 9FFdqULFz34Lqy/MdFi9xf8h4UZR4RCcU+ye1UaQxsNp8SXoxKQ93juhhkoi14/hTS Pps/8B+oSXojO12lkmCvV8isFhG8vShEV4VZDclJquyKzpHmXTAvrYZ7YOT7BOKeLs eXPgpsWL6Fqdg== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4VcCSP0xhpz9rxK; Sat, 11 May 2024 19:30:12 +0200 (CEST) Message-ID: Date: Sat, 11 May 2024 17:29:43 +0000 MIME-Version: 1.0 References: <2044bf6af204b5384987458a22229cb0415a6a36.1712828385.git.monego@posteo.net> <87v84intiw.fsf@ngraves.fr> Content-Language: en-US From: Vinicius Monego In-Reply-To: <87v84intiw.fsf@ngraves.fr> Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: guix-patches-bounces+larch=yhetil.org@gnu.org X-Migadu-Country: US X-Migadu-Flow: FLOW_IN X-Migadu-Queue-Id: 5256B310B8 X-Migadu-Scanner: mx12.migadu.com X-Migadu-Spam-Score: 2.42 X-Spam-Score: 2.42 X-TUID: CRKdgXHu4ZP0 Em 15/04/2024 19:35, Nicolas Graves escreveu: > On 2024-04-11 09:42, Vinicius Monego wrote: > >> * gnu/packages/maths.scm (python-libensemble): New variable. >> >> Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f >> --- >> gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++ >> 1 file changed, 53 insertions(+) >> >> diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm >> index 03760f3f3e..6f7e67329e 100644 >> --- a/gnu/packages/maths.scm >> +++ b/gnu/packages/maths.scm >> @@ -839,6 +839,59 @@ (define-public glpk-4 >> (base32 >> "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2")))))) >> >> +(define-public python-libensemble >> + (package >> + (name "python-libensemble") >> + (version "1.2.2") >> + (source >> + (origin >> + (method url-fetch) >> + (uri (pypi-uri "libensemble" version)) >> + (sha256 >> + (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk")))) >> + (build-system pyproject-build-system) >> + (native-inputs (list ncurses >> + python-mock >> + python-mpi4py >> + python-pytest >> + python-pytest-cov >> + python-pytest-timeout)) >> + (propagated-inputs (list python-numpy >> + python-psutil >> + python-pydantic-2 >> + python-pyyaml >> + python-tomli)) >> + (arguments >> + (list >> + #:phases >> + #~(modify-phases %standard-phases >> + (add-after 'unpack 'relax-psutil >> + (lambda _ >> + (substitute* "setup.py" >> + (("psutil>=5.9.4") "psutil>=5.9.2")))) >> + (replace 'check >> + (lambda* (#:key tests? #:allow-other-keys) >> + (when tests? >> + ;; These files require MPI and call subprocesses. >> + (delete-file >> + "libensemble/tests/unit_tests/test_executor.py") >> + (delete-file >> + "libensemble/tests/unit_tests/test_executor_gpus.py") >> + ;; Run only unit tests, regression tests require MPI. >> + (setenv "TERM" "xterm") >> + ;; A very bad way to skip another MPI test. >> + (substitute* "libensemble/tests/run-tests.sh" >> + (("export UNIT_TEST_MPI_SUBDIR=.*") >> + "export UNIT_TEST_MPI_SUBDIR=''")) >> + ;; Run the test script. >> + (invoke "bash" "libensemble/tests/run-tests.sh" "-u"))))))) >> + (home-page "https://github.com/Libensemble/libensemble") >> + (synopsis "Toolkit for dynamic ensembles of calculations") >> + (description "@code{libensemble} is a a complete toolkit for dynamic > Just a little typo here (double a), otherwise LGTM. > guix lint only complains on archival, but it's fine. > built and rebuilt. Pushed  with that correction and an update to 1.3.0, thanks.