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* [bug#69591] [PATCH 00/31] Unbundle and update python-pytorch
@ 2024-03-06 19:37 David Elsing
  2024-03-06 19:40 ` [bug#69591] [PATCH 01/31] gnu: asmjit: Update to commit 3ca5c18 David Elsing
                   ` (31 more replies)
  0 siblings, 32 replies; 130+ messages in thread
From: David Elsing @ 2024-03-06 19:37 UTC (permalink / raw)
  To: 69591; +Cc: David Elsing

This patch series unbundles all dependencies of python-pytorch (updated to
version 2.2.1) and removes all* autogenerated files, completing the work by
Ludo' [1]. I also applied the unbundling to python-pytorch-for-r-torch
(version 2.0.1) and made sure that r-torch still builds.

Originally, I wanted to package PyTorch with ROCm, but decided that it would
be better to first update the package and complete the unbundling.  This was
more work than I initially thought though, so this patch series is quite long.

Caffe2 is heavily integrated in the PyTorch code, so unbundling it does
not make sense.

For QNNPACK, the situation is strange: There is an old version [2] and an
internal fork in aten/src/ATen/native/quantized/cpu/qnnpack, which PyTorch
both depends on (as well as XNNPACK). The internal fork does not depend on
other parts of the code currently, so I unbundled it as well as a package
variant of qnnpack.

ideep [3] has a separate branch for PyTorch (the master branch does not
seem maintained), which only contains header files without build
instructions. Therefore, I made a simple package with the header files.

miniz also requires a package variant for PyTorch.

Several scripts for autogenerated files depend on the compiled PyTorch
library. However, it was possible to patch the scripts with empty values
and later regenerate the files with the initial PyTorch version.
Therefore, I introduced the 'codegen2, 'build2 and 'install2 build
phases running after the initial library is installed. In 'codegen2, the
installed library is used to regenerate the files properly, which leads
to a recompilation of only 12 files in the 'build2 phase.

The core tests can be run as well, but I disabled them as they take
a long time after an already long build.

I also wanted to try and build python-pytorch on i686-linux, as it doesn't
require emulation on an x86_64 CPU, but it depends on Rust through
python-cryptography, for which there are no substitutes available currently.

Cheers,
David

* with the exception of test/cpp/api/init_baseline.h and
test/cpp/api/optim_baseline.h, which are just lists of previously
calculated numbers; or any other generated file I might have missed.

[1] https://hpc.guix.info/blog/2021/09/whats-in-a-package/
[2] https://github.com/pytorch/QNNPACK
[3] https://github.com/intel/ideep/tree/pytorch

David Elsing (31):
  gnu: asmjit: Update to commit 3ca5c18.
  gnu: Add python-typing-extensions-4.10.
  gnu: Add python-optree.
  gnu: Add python-pytest-flakefinder.
  gnu: Add python-pytest-shard.
  gnu: Add python-expecttest.
  gnu: Add python-pytest-rerunfailures-13.
  gnu: Add miniz.
  gnu: Add miniz-for-pytorch.
  gnu: Add libnop.
  gnu: Remove flatbuffers-next-shared.
  gnu: python-flatbuffers-next: Update to 23.5.26.
  gnu: pthreadpool: Update to commit 178e3e0.
  gnu: cpuinfo: Update to commit aa4b216.
  gnu: clog: Add "-DUSE_SYSTEM_LIBS=ON" configure flag.
  gnu: nnpack: Update to commit 70a77f4.
  gnu: oneapi-dnnl: Update to 3.3.5.
  gnu: Add tensorpipe.
  gnu: Add fbgemm.
  gnu: Add qnnpack.
  gnu: Add foxi.
  gnu: Add ideep-pytorch.
  gnu: xnnpack: Update to commit 51a9875.
  gnu: Remove xnnpack-for-torch2.
  gnu: Add qnnpack-pytorch.
  gnu: python-pytorch: Update to 2.2.1 and unbundle dependencies.
  gnu: python-torchvision: Update to 0.17.1.
  gnu: Add ideep-pytorch-for-r-torch.
  gnu: Add oneapi-dnnl-for-r-torch.
  gnu: Add qnnpack-pytorch-for-r-torch.
  gnu: python-pytorch-for-r-torch: Adjust to new python-pytorch.

 gnu/local.mk                                  |    9 +-
 gnu/packages/compression.scm                  |   49 +
 gnu/packages/cpp.scm                          |    6 +-
 gnu/packages/machine-learning.scm             |  874 +++-
 gnu/packages/parallel.scm                     |   30 +-
 .../patches/clog-fix-shared-build.patch       |   39 +-
 .../patches/cpuinfo-system-libraries.patch    |   50 -
 .../patches/fbgemm-use-system-libraries.patch |   62 +
 gnu/packages/patches/foxi-fix-build.patch     |   55 +
 gnu/packages/patches/miniz-for-pytorch.patch  |   47 +
 .../patches/python-optree-fix-32-bit.patch    |  122 +
 ...ython-pytorch-1.9.0-system-libraries.patch |  139 -
 .../patches/python-pytorch-fix-codegen.patch  |  167 +
 ...thon-pytorch-for-r-torch-fix-codegen.patch |  167 +
 ...pytorch-for-r-torch-system-libraries.patch |  390 ++
 .../patches/python-pytorch-runpath.patch      |   19 +-
 .../python-pytorch-system-libraries.patch     |  324 +-
 .../python-pytorch-without-kineto.patch       |   60 +
 .../python-pytorch2-system-libraries.patch    |  156 -
 .../xnnpack-for-torch2-system-libraries.patch | 2660 -----------
 .../patches/xnnpack-remove-broken-tests.patch |  335 ++
 .../patches/xnnpack-system-libraries.patch    | 4133 ++++++++++-------
 gnu/packages/python-build.scm                 |   12 +
 gnu/packages/python-check.scm                 |   88 +
 gnu/packages/python-xyz.scm                   |   29 +
 gnu/packages/serialization.scm                |   53 +-
 26 files changed, 5111 insertions(+), 4964 deletions(-)
 delete mode 100644 gnu/packages/patches/cpuinfo-system-libraries.patch
 create mode 100644 gnu/packages/patches/fbgemm-use-system-libraries.patch
 create mode 100644 gnu/packages/patches/foxi-fix-build.patch
 create mode 100644 gnu/packages/patches/miniz-for-pytorch.patch
 create mode 100644 gnu/packages/patches/python-optree-fix-32-bit.patch
 delete mode 100644 gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch
 create mode 100644 gnu/packages/patches/python-pytorch-fix-codegen.patch
 create mode 100644 gnu/packages/patches/python-pytorch-for-r-torch-fix-codegen.patch
 create mode 100644 gnu/packages/patches/python-pytorch-for-r-torch-system-libraries.patch
 create mode 100644 gnu/packages/patches/python-pytorch-without-kineto.patch
 delete mode 100644 gnu/packages/patches/python-pytorch2-system-libraries.patch
 delete mode 100644 gnu/packages/patches/xnnpack-for-torch2-system-libraries.patch
 create mode 100644 gnu/packages/patches/xnnpack-remove-broken-tests.patch

-- 
2.41.0





^ permalink raw reply	[flat|nested] 130+ messages in thread

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2024-03-06 19:37 [bug#69591] [PATCH 00/31] Unbundle and update python-pytorch David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 01/31] gnu: asmjit: Update to commit 3ca5c18 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 02/31] gnu: Add python-typing-extensions-4.10 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 03/31] gnu: Add python-optree David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 04/31] gnu: Add python-pytest-flakefinder David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 05/31] gnu: Add python-pytest-shard David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 06/31] gnu: Add python-expecttest David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 07/31] gnu: Add python-pytest-rerunfailures-13 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 08/31] gnu: Add miniz David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 09/31] gnu: Add miniz-for-pytorch David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 10/31] gnu: Add libnop David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 11/31] gnu: Remove flatbuffers-next-shared David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 12/31] gnu: python-flatbuffers-next: Update to 23.5.26 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 13/31] gnu: pthreadpool: Update to commit 178e3e0 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 14/31] gnu: cpuinfo: Update to commit aa4b216 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 15/31] gnu: clog: Add "-DUSE_SYSTEM_LIBS=ON" configure flag David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 16/31] gnu: nnpack: Update to commit 70a77f4 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 17/31] gnu: oneapi-dnnl: Update to 3.3.5 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 18/31] gnu: Add tensorpipe David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 19/31] gnu: Add fbgemm David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 20/31] gnu: Add qnnpack David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 21/31] gnu: Add foxi David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 22/31] gnu: Add ideep-pytorch David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 23/31] gnu: xnnpack: Update to commit 51a9875 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 24/31] gnu: Remove xnnpack-for-torch2 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 25/31] gnu: Add qnnpack-pytorch David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 26/31] gnu: python-pytorch: Update to 2.2.1 and unbundle dependencies David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 27/31] gnu: python-torchvision: Update to 0.17.1 David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 28/31] gnu: Add ideep-pytorch-for-r-torch David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 29/31] gnu: Add oneapi-dnnl-for-r-torch David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 30/31] gnu: Add qnnpack-pytorch-for-r-torch David Elsing
2024-03-06 19:40 ` [bug#69591] [PATCH 31/31] gnu: python-pytorch-for-r-torch: Adjust to new python-pytorch David Elsing
2024-03-12 22:46 ` [bug#69591] [PATCH v2 00/31] Unbundle and update python-pytorch David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 01/31] gnu: asmjit: Update to commit 3ca5c18 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 02/31] gnu: Add python-typing-extensions-4.10 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 03/31] gnu: Add python-optree David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 04/31] gnu: Add python-pytest-flakefinder David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 05/31] gnu: Add python-pytest-shard David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 06/31] gnu: Add python-expecttest David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 07/31] gnu: Add python-pytest-rerunfailures-13 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 08/31] gnu: Add miniz David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 09/31] gnu: Add miniz-for-pytorch David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 10/31] gnu: Add libnop David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 11/31] gnu: Remove flatbuffers-next-shared David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 12/31] gnu: python-flatbuffers-next: Update to 23.5.26 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 13/31] gnu: pthreadpool: Update to commit 178e3e0 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 14/31] gnu: cpuinfo: Update to commit aa4b216 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 15/31] gnu: clog: Add "-DUSE_SYSTEM_LIBS=ON" configure flag David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 16/31] gnu: nnpack: Update to commit 70a77f4 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 17/31] gnu: oneapi-dnnl: Update to 3.3.5 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 18/31] gnu: Add tensorpipe David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 19/31] gnu: Add fbgemm David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 20/31] gnu: Add qnnpack David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 21/31] gnu: Add foxi David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 22/31] gnu: Add ideep-pytorch David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 23/31] gnu: xnnpack: Update to commit 51a9875 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 24/31] gnu: Remove xnnpack-for-torch2 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 25/31] gnu: Add qnnpack-pytorch David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 26/31] gnu: python-pytorch: Update to 2.2.1 and unbundle dependencies David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 27/31] gnu: python-torchvision: Update to 0.17.1 David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 28/31] gnu: Add ideep-pytorch-for-r-torch David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 29/31] gnu: Add oneapi-dnnl-for-r-torch David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 30/31] gnu: Add qnnpack-pytorch-for-r-torch David Elsing
2024-03-12 22:51   ` [bug#69591] [PATCH v2 31/31] gnu: python-pytorch-for-r-torch: Adjust to new python-pytorch David Elsing
2024-03-20 22:37   ` [bug#69591] [PATCH v3 00/32] Unbundle and update python-pytorch David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 01/32] gnu: asmjit: Update to commit 3ca5c18 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 02/32] gnu: Add python-typing-extensions-4.10 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 03/32] gnu: Add python-optree David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 04/32] gnu: Add python-pytest-flakefinder David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 05/32] gnu: Add python-pytest-shard David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 06/32] gnu: Add python-expecttest David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 07/32] gnu: Add python-pytest-rerunfailures-13 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 08/32] gnu: Add miniz David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 09/32] gnu: Add miniz-for-pytorch David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 10/32] gnu: Add libnop David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 11/32] gnu: Remove flatbuffers-next-shared David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 12/32] gnu: python-flatbuffers-next: Update to 23.5.26 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 13/32] gnu: pthreadpool: Update to commit 178e3e0 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 14/32] gnu: cpuinfo: Update to commit aa4b216 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 15/32] gnu: clog: Add "-DUSE_SYSTEM_LIBS=ON" configure flag David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 16/32] gnu: nnpack: Update to commit 70a77f4 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 17/32] gnu: oneapi-dnnl: Update to 3.3.5 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 18/32] gnu: Add tensorpipe David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 19/32] gnu: Add fbgemm David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 20/32] gnu: Add qnnpack David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 21/32] gnu: Add foxi David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 22/32] gnu: Add ideep-pytorch David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 23/32] gnu: xnnpack: Update to commit 51a9875 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 24/32] gnu: Remove xnnpack-for-torch2 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 25/32] gnu: Add qnnpack-pytorch David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 26/32] gnu: python-pytorch: Update to 2.2.1 and unbundle dependencies David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 27/32] gnu: Add python-pytorch-avx David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 28/32] gnu: python-torchvision: Update to 0.17.1 David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 29/32] gnu: Add ideep-pytorch-for-r-torch David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 30/32] gnu: Add oneapi-dnnl-for-r-torch David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 31/32] gnu: Add qnnpack-pytorch-for-r-torch David Elsing
2024-03-20 22:38     ` [bug#69591] [PATCH v3 32/32] gnu: python-pytorch-for-r-torch: Adjust to new python-pytorch David Elsing
2024-03-23 21:40     ` [bug#69591] [PATCH v4 00/32] Unbundle and update python-pytorch David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 01/32] gnu: asmjit: Update to commit 3ca5c18 David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 02/32] gnu: Add python-typing-extensions-4.10 David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 03/32] gnu: Add python-optree David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 04/32] gnu: Add python-pytest-flakefinder David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 05/32] gnu: Add python-pytest-shard David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 06/32] gnu: Add python-expecttest David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 07/32] gnu: Add python-pytest-rerunfailures-13 David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 08/32] gnu: Add miniz David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 09/32] gnu: Add miniz-for-pytorch David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 10/32] gnu: Add libnop David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 11/32] gnu: Remove flatbuffers-next-shared David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 12/32] gnu: python-flatbuffers-next: Update to 23.5.26 David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 13/32] gnu: pthreadpool: Update to commit 178e3e0 David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 14/32] gnu: cpuinfo: Update to commit aa4b216 David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 15/32] gnu: clog: Add "-DUSE_SYSTEM_LIBS=ON" configure flag David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 16/32] gnu: nnpack: Update to commit 70a77f4 David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 17/32] gnu: oneapi-dnnl: Update to 3.3.5 David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 18/32] gnu: Add tensorpipe David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 19/32] gnu: Add fbgemm David Elsing
2024-03-23 22:04       ` [bug#69591] [PATCH v4 20/32] gnu: Add qnnpack David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 21/32] gnu: Add foxi David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 22/32] gnu: Add ideep-pytorch David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 23/32] gnu: xnnpack: Update to commit 51a9875 David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 24/32] gnu: Remove xnnpack-for-torch2 David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 25/32] gnu: Add qnnpack-pytorch David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 26/32] gnu: python-pytorch: Update to 2.2.1 and unbundle dependencies David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 27/32] gnu: Add python-pytorch-avx David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 28/32] gnu: python-torchvision: Update to 0.17.1 David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 29/32] gnu: Add ideep-pytorch-for-r-torch David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 30/32] gnu: Add oneapi-dnnl-for-r-torch David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 31/32] gnu: Add qnnpack-pytorch-for-r-torch David Elsing
2024-03-23 22:05       ` [bug#69591] [PATCH v4 32/32] gnu: python-pytorch-for-r-torch: Adjust to new python-pytorch David Elsing

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