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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <58879@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#58879] [PATCH 4/5] gnu: Add r-deconrnaseq.
Date: Sun, 30 Oct 2022 01:16:07 +0200	[thread overview]
Message-ID: <20221029231608.13909-4-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-deconrnaseq): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7f6ba37bf8..ce95a9e5af 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3193,6 +3193,33 @@ (define-public r-decomptumor2sig
 to the mutation load of the tumor.")
     (license license:gpl2)))
 
+(define-public r-deconrnaseq
+  (package
+    (name "r-deconrnaseq")
+    (version "1.38.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "DeconRNASeq" version))
+              (sha256
+               (base32
+                "10smk88srxm58hli0fhkdfd6l5z02q58xc9mww39gkn71y0127k6"))))
+    (properties `((upstream-name . "DeconRNASeq")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-ggplot2
+           r-limsolve
+           r-pcamethods))
+    (home-page "https://bioconductor.org/packages/DeconRNASeq")
+    (synopsis
+     "Deconvolution of heterogeneous tissue samples for mRNA-Seq data")
+    (description
+     "@code{DeconSeq} is an R package for deconvolution of heterogeneous tissues
+based on mRNA-Seq data.  It models the expression levels from heterogeneous cell
+populations in mRNA-Seq as the weighted average of expression from different
+constituting cell types and predicted cell type proportions of single expression
+profiles.")
+    (license license:gpl2)))
+
 (define-public r-deconvr
   (package
     (name "r-deconvr")
-- 
2.38.0





  parent reply	other threads:[~2022-10-29 23:17 UTC|newest]

Thread overview: 7+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-10-29 23:09 [bug#58879] [PATCH] gnu: Add r-deco, r-decomplexdisease, r-decomptumor2sig, r-deconrnaseq and r-decontam MadalinIonel.Patrascu
2022-10-29 23:16 ` [bug#58879] [PATCH 1/5] gnu: Add r-deco Mădălin Ionel Patrașcu
2022-10-29 23:16   ` [bug#58879] [PATCH 2/5] gnu: Add r-decomplexdisease Mădălin Ionel Patrașcu
2022-10-29 23:16   ` [bug#58879] [PATCH 3/5] gnu: Add r-decomptumor2sig Mădălin Ionel Patrașcu
2022-10-29 23:16   ` Mădălin Ionel Patrașcu [this message]
2022-10-29 23:16   ` [bug#58879] [PATCH 5/5] gnu: Add r-decontam Mădălin Ionel Patrașcu
2022-10-31 19:06   ` bug#58879: [PATCH 1/5] gnu: Add r-deco Ricardo Wurmus

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