From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <58879@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#58879] [PATCH 4/5] gnu: Add r-deconrnaseq.
Date: Sun, 30 Oct 2022 01:16:07 +0200 [thread overview]
Message-ID: <20221029231608.13909-4-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de>
* gnu/packages/bioconductor.scm (r-deconrnaseq): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7f6ba37bf8..ce95a9e5af 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3193,6 +3193,33 @@ (define-public r-decomptumor2sig
to the mutation load of the tumor.")
(license license:gpl2)))
+(define-public r-deconrnaseq
+ (package
+ (name "r-deconrnaseq")
+ (version "1.38.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DeconRNASeq" version))
+ (sha256
+ (base32
+ "10smk88srxm58hli0fhkdfd6l5z02q58xc9mww39gkn71y0127k6"))))
+ (properties `((upstream-name . "DeconRNASeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ggplot2
+ r-limsolve
+ r-pcamethods))
+ (home-page "https://bioconductor.org/packages/DeconRNASeq")
+ (synopsis
+ "Deconvolution of heterogeneous tissue samples for mRNA-Seq data")
+ (description
+ "@code{DeconSeq} is an R package for deconvolution of heterogeneous tissues
+based on mRNA-Seq data. It models the expression levels from heterogeneous cell
+populations in mRNA-Seq as the weighted average of expression from different
+constituting cell types and predicted cell type proportions of single expression
+profiles.")
+ (license license:gpl2)))
+
(define-public r-deconvr
(package
(name "r-deconvr")
--
2.38.0
next prev parent reply other threads:[~2022-10-29 23:17 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-10-29 23:09 [bug#58879] [PATCH] gnu: Add r-deco, r-decomplexdisease, r-decomptumor2sig, r-deconrnaseq and r-decontam MadalinIonel.Patrascu
2022-10-29 23:16 ` [bug#58879] [PATCH 1/5] gnu: Add r-deco Mădălin Ionel Patrașcu
2022-10-29 23:16 ` [bug#58879] [PATCH 2/5] gnu: Add r-decomplexdisease Mădălin Ionel Patrașcu
2022-10-29 23:16 ` [bug#58879] [PATCH 3/5] gnu: Add r-decomptumor2sig Mădălin Ionel Patrașcu
2022-10-29 23:16 ` Mădălin Ionel Patrașcu [this message]
2022-10-29 23:16 ` [bug#58879] [PATCH 5/5] gnu: Add r-decontam Mădălin Ionel Patrașcu
2022-10-31 19:06 ` bug#58879: [PATCH 1/5] gnu: Add r-deco Ricardo Wurmus
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