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From: "Mădălin Ionel Patrașcu" <madalinionel.patrascu@mdc-berlin.de>
To: <58879@debbugs.gnu.org>
Cc: rekado@elephly.net
Subject: [bug#58879] [PATCH 2/5] gnu: Add r-decomplexdisease.
Date: Sun, 30 Oct 2022 01:16:05 +0200	[thread overview]
Message-ID: <20221029231608.13909-2-madalinionel.patrascu@mdc-berlin.de> (raw)
In-Reply-To: <20221029231608.13909-1-madalinionel.patrascu@mdc-berlin.de>

* gnu/packages/bioconductor.scm (r-decomplexdisease): New variable.
---
 gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2f2268e5e6..809ba69bc3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3117,6 +3117,39 @@ (define-public r-deco
 related to higher deregulation levels.")
     (license (license:fsdg-compatible "GPL (>=3)"))))
 
+(define-public r-decomplexdisease
+  (package
+    (name "r-decomplexdisease")
+    (version "1.16.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "DEComplexDisease" version))
+              (sha256
+               (base32
+                "09a967x1rnv7byjwh29ngjhs67rgg27zblmlzx6pyqlwy5jsp89d"))))
+    (properties `((upstream-name . "DEComplexDisease")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biocparallel
+           r-complexheatmap
+           r-deseq2
+           r-edger
+           r-rcpp
+           r-summarizedexperiment))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/DEComplexDisease")
+    (synopsis "Investigations of complex diseases by bi-clustering analysis")
+    (description
+     "@code{DEComplexDisease} is designed to find the @acronym{DEGs, Differential
+Expressed Genes} for complex disease, which is characterized by the heterogeneous
+genomic expression profiles.  Different from the established DEG analysis tools,
+it does not assume the patients of complex diseases to share the common DEGs.
+By applying a bi-clustering algorithm, @code{DEComplexDisease} finds the DEGs
+shared by as many patients.  Applying the @code{DEComplexDisease} analysis
+results, users are possible to find the patients affected by the same mechanism
+based on the shared signatures.")
+    (license license:gpl3)))
+
 (define-public r-deconvr
   (package
     (name "r-deconvr")
-- 
2.38.0





  reply	other threads:[~2022-10-29 23:17 UTC|newest]

Thread overview: 7+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2022-10-29 23:09 [bug#58879] [PATCH] gnu: Add r-deco, r-decomplexdisease, r-decomptumor2sig, r-deconrnaseq and r-decontam MadalinIonel.Patrascu
2022-10-29 23:16 ` [bug#58879] [PATCH 1/5] gnu: Add r-deco Mădălin Ionel Patrașcu
2022-10-29 23:16   ` Mădălin Ionel Patrașcu [this message]
2022-10-29 23:16   ` [bug#58879] [PATCH 3/5] gnu: Add r-decomptumor2sig Mădălin Ionel Patrașcu
2022-10-29 23:16   ` [bug#58879] [PATCH 4/5] gnu: Add r-deconrnaseq Mădălin Ionel Patrașcu
2022-10-29 23:16   ` [bug#58879] [PATCH 5/5] gnu: Add r-decontam Mădălin Ionel Patrașcu
2022-10-31 19:06   ` bug#58879: [PATCH 1/5] gnu: Add r-deco Ricardo Wurmus

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