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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=F6aiVqIX; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.76 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=F6aiVqIX; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 899252CCA9 X-Spam-Score: 5.76 X-Migadu-Scanner: scn0.migadu.com X-TUID: Cs7vrGCsMTRZ * gnu/packages/bioconductor.scm (r-deconrnaseq): New variable. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7f6ba37bf8..ce95a9e5af 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -3193,6 +3193,33 @@ (define-public r-decomptumor2sig to the mutation load of the tumor.") (license license:gpl2))) +(define-public r-deconrnaseq + (package + (name "r-deconrnaseq") + (version "1.38.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "DeconRNASeq" version)) + (sha256 + (base32 + "10smk88srxm58hli0fhkdfd6l5z02q58xc9mww39gkn71y0127k6")))) + (properties `((upstream-name . "DeconRNASeq"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 + r-limsolve + r-pcamethods)) + (home-page "https://bioconductor.org/packages/DeconRNASeq") + (synopsis + "Deconvolution of heterogeneous tissue samples for mRNA-Seq data") + (description + "@code{DeconSeq} is an R package for deconvolution of heterogeneous tissues +based on mRNA-Seq data. It models the expression levels from heterogeneous cell +populations in mRNA-Seq as the weighted average of expression from different +constituting cell types and predicted cell type proportions of single expression +profiles.") + (license license:gpl2))) + (define-public r-deconvr (package (name "r-deconvr") -- 2.38.0