unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
* [bug#56266] [PATCH] gnu: Add r-bader.
@ 2022-06-27 21:28 Mădălin Ionel Patrașcu
  2022-10-27 13:45 ` bug#56266: " Ricardo Wurmus
  0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2022-06-27 21:28 UTC (permalink / raw)
  To: 56266

* gnu/packages/bioconductor.scm (r-bader): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..6d65cc1c1f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,30 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-bader
+  (package
+    (name "r-bader")
+    (version "1.34.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BADER" version))
+              (sha256
+               (base32
+                "0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm"))))
+    (properties `((upstream-name . "BADER")))
+    (build-system r-build-system)
+    (home-page "https://bioconductor.org/packages/BADER")
+    (synopsis
+     "Bayesian analysis of differential expression in RNA sequencing data")
+    (description
+     "The @code{BADER} package is intended for the analysis of RNA sequencing
+data.  The algorithm fits a Bayesian hierarchical model for RNA sequencing count
+data.  @code{BADER} returns the posterior probability of differential expression
+for each gene between two groups A and B.  The joint posterior distribution of
+the variables in the model can be returned in the form of posterior samples,
+which can be used for further down-stream analyses such as gene set enrichment.")
+    (license license:gpl2)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
-- 
2.36.1





^ permalink raw reply related	[flat|nested] 2+ messages in thread

* bug#56266: [PATCH] gnu: Add r-bader.
  2022-06-27 21:28 [bug#56266] [PATCH] gnu: Add r-bader Mădălin Ionel Patrașcu
@ 2022-10-27 13:45 ` Ricardo Wurmus
  0 siblings, 0 replies; 2+ messages in thread
From: Ricardo Wurmus @ 2022-10-27 13:45 UTC (permalink / raw)
  To: 56266-done

Applied with minor changes, thank you!

-- 
Ricardo




^ permalink raw reply	[flat|nested] 2+ messages in thread

end of thread, other threads:[~2022-10-27 13:46 UTC | newest]

Thread overview: 2+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2022-06-27 21:28 [bug#56266] [PATCH] gnu: Add r-bader Mădălin Ionel Patrașcu
2022-10-27 13:45 ` bug#56266: " Ricardo Wurmus

Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).