* [bug#56163] [PATCH] gnu: Add r-atsnp.
@ 2022-06-23 10:46 Mădălin Ionel Patrașcu
2022-10-31 20:40 ` bug#56163: " Ricardo Wurmus
0 siblings, 1 reply; 2+ messages in thread
From: Mădălin Ionel Patrașcu @ 2022-06-23 10:46 UTC (permalink / raw)
To: 56163
* gnu/packages/bioconductor.scm (r-atsnp): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..f4c5f6e17b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,39 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-atsnp
+ (package
+ (name "r-atsnp")
+ (version "1.12.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "atSNP" version))
+ (sha256
+ (base32
+ "0dmv34xqwr3l2rznapxmyrkyf1w78qzxdv88s5nn8s1m8qdkgwkz"))))
+ (properties `((upstream-name . "atSNP")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biocfilecache
+ r-biocparallel
+ r-bsgenome
+ r-data-table
+ r-ggplot2
+ r-lifecycle
+ r-motifstack
+ r-rappdirs
+ r-rcpp
+ r-testthat))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/sunyoungshin/atSNP")
+ (synopsis
+ "Affinity test for identifying regulatory single nucleotide polymorphisms")
+ (description
+ "The @code{atSNP} package performs affinity tests of motif matches with the
+@dfn{SNP} (single nucleotide polymorphism) or the reference genomes and SNP-led
+changes in motif matches.")
+ (license license:gpl2)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1
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2022-06-23 10:46 [bug#56163] [PATCH] gnu: Add r-atsnp Mădălin Ionel Patrașcu
2022-10-31 20:40 ` bug#56163: " Ricardo Wurmus
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