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spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: 5.84 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=mdc-berlin.de header.s=mdc header.b=jrg5DWDv; dmarc=fail reason="SPF not aligned (relaxed)" header.from=mdc-berlin.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "guix-patches-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="guix-patches-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: A1AAC2A70B X-Spam-Score: 5.84 X-Migadu-Scanner: scn0.migadu.com X-TUID: OBD5wub1FOGb * gnu/packages/bioconductor.scm (r-atsnp): New variable. --- gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1e87b190c2..f4c5f6e17b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2029,6 +2029,39 @@ (define-public r-aneufinder sequencing data.") (license license:artistic2.0))) +(define-public r-atsnp + (package + (name "r-atsnp") + (version "1.12.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "atSNP" version)) + (sha256 + (base32 + "0dmv34xqwr3l2rznapxmyrkyf1w78qzxdv88s5nn8s1m8qdkgwkz")))) + (properties `((upstream-name . "atSNP"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocfilecache + r-biocparallel + r-bsgenome + r-data-table + r-ggplot2 + r-lifecycle + r-motifstack + r-rappdirs + r-rcpp + r-testthat)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/sunyoungshin/atSNP") + (synopsis + "Affinity test for identifying regulatory single nucleotide polymorphisms") + (description + "The @code{atSNP} package performs affinity tests of motif matches with the +@dfn{SNP} (single nucleotide polymorphism) or the reference genomes and SNP-led +changes in motif matches.") + (license license:gpl2))) + (define-public r-biocversion (package (name "r-biocversion") base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9 -- 2.36.1