From: zimoun <zimon.toutoune@gmail.com>
To: 47171@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#47171] [PATCH 08/10] gnu: r-biostrings: Move to (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 19:09:02 +0100 [thread overview]
Message-ID: <20210315180904.8346-8-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20210315180904.8346-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-biostrings): Move from here...
* gnu/packages/bioconductor.scm (r-biostrings): ...to here.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 27 ---------------------------
2 files changed, 27 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6482d8e4c1..2b7d65023d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1686,6 +1686,33 @@ functions for parallel evaluation, tailored to use with Bioconductor
objects.")
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-biostrings
+ (package
+ (name "r-biostrings")
+ (version "2.58.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Biostrings" version))
+ (sha256
+ (base32
+ "1rbqhs73mhfr1gi0rx28jiyan7i3hb45ai3jpl1656fnrhgjfxq5"))))
+ (properties
+ `((upstream-name . "Biostrings")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-crayon" ,r-crayon)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xvector" ,r-xvector)))
+ (home-page "https://bioconductor.org/packages/Biostrings")
+ (synopsis "String objects and algorithms for biological sequences")
+ (description
+ "This package provides memory efficient string containers, string
+matching algorithms, and other utilities, for fast manipulation of large
+biological sequences or sets of sequences.")
+ (license license:artistic2.0)))
+
(define-public r-category
(package
(name "r-category")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index af3fa36b19..415210085e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,33 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-biostrings
- (package
- (name "r-biostrings")
- (version "2.58.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "Biostrings" version))
- (sha256
- (base32
- "1rbqhs73mhfr1gi0rx28jiyan7i3hb45ai3jpl1656fnrhgjfxq5"))))
- (properties
- `((upstream-name . "Biostrings")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-crayon" ,r-crayon)
- ("r-iranges" ,r-iranges)
- ("r-s4vectors" ,r-s4vectors)
- ("r-xvector" ,r-xvector)))
- (home-page "https://bioconductor.org/packages/Biostrings")
- (synopsis "String objects and algorithms for biological sequences")
- (description
- "This package provides memory efficient string containers, string
-matching algorithms, and other utilities, for fast manipulation of large
-biological sequences or sets of sequences.")
- (license license:artistic2.0)))
-
(define-public r-rsamtools
(package
(name "r-rsamtools")
--
2.30.1
next prev parent reply other threads:[~2021-03-15 18:39 UTC|newest]
Thread overview: 24+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-03-15 18:07 [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 01/10] gnu: r-limma: Move " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 02/10] gnu: r-xvector: " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 03/10] gnu: r-genomicranges: " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 04/10] gnu: r-biobase: " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 05/10] gnu: r-annotationdbi: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 06/10] gnu: r-biomart: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 07/10] gnu: r-biocparallel: " zimoun
2021-03-15 18:09 ` zimoun [this message]
2021-03-15 18:09 ` [bug#47171] [PATCH 09/10] gnu: r-rsamtools: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 10/10] gnu: r-delayedarray: " zimoun
2021-03-15 22:33 ` bug#47171: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
2021-03-15 23:56 ` [bug#47171] " Leo Famulari
2021-03-16 12:27 ` zimoun
2021-03-16 13:20 ` Ricardo Wurmus
2021-03-16 13:30 ` zimoun
2021-03-16 16:08 ` Ricardo Wurmus
2021-03-16 16:36 ` zimoun
2021-03-16 22:04 ` Ricardo Wurmus
2021-03-17 20:15 ` zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 1/3] gnu: r-bisquerna: Move " zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 2/3] gnu: r-absfiltergsea: " zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 3/3] Revert "Revert some commits that caused `guix pull` to fail." zimoun
2021-03-31 19:29 ` bug#47171: [PATCH v2 1/3] gnu: r-bisquerna: Move to (gnu packages bioconductor) Ricardo Wurmus
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