From: zimoun <zimon.toutoune@gmail.com>
To: 47171@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>
Subject: [bug#47171] [PATCH 01/10] gnu: r-limma: Move to (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 19:08:55 +0100 [thread overview]
Message-ID: <20210315180904.8346-1-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20210315180714.8233-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-limma): Move from here...
* gnu/packages/bioconductor.scm (r-limma): ...to here.
---
gnu/packages/bioconductor.scm | 19 +++++++++++++++++++
gnu/packages/bioinformatics.scm | 19 -------------------
2 files changed, 19 insertions(+), 19 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d611f3a491..379b6c30c0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1850,6 +1850,25 @@ Enrichment Analysis} (GSEA).")
the Human Protein Atlas project.")
(license license:artistic2.0)))
+(define-public r-limma
+ (package
+ (name "r-limma")
+ (version "3.46.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "limma" version))
+ (sha256
+ (base32
+ "1xxv493q1kip9bjfv7v7k5dnq7hz7gvl80i983v4mvwavhgnbxfz"))))
+ (build-system r-build-system)
+ (home-page "http://bioinf.wehi.edu.au/limma")
+ (synopsis "Package for linear models for microarray and RNA-seq data")
+ (description "This package can be used for the analysis of gene expression
+studies, especially the use of linear models for analysing designed experiments
+and the assessment of differential expression. The analysis methods apply to
+different technologies, including microarrays, RNA-seq, and quantitative PCR.")
+ (license license:gpl2+)))
+
(define-public r-rbgl
(package
(name "r-rbgl")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d9afe2c56f..9774b442a3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,25 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-limma
- (package
- (name "r-limma")
- (version "3.46.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "limma" version))
- (sha256
- (base32
- "1xxv493q1kip9bjfv7v7k5dnq7hz7gvl80i983v4mvwavhgnbxfz"))))
- (build-system r-build-system)
- (home-page "http://bioinf.wehi.edu.au/limma")
- (synopsis "Package for linear models for microarray and RNA-seq data")
- (description "This package can be used for the analysis of gene expression
-studies, especially the use of linear models for analysing designed experiments
-and the assessment of differential expression. The analysis methods apply to
-different technologies, including microarrays, RNA-seq, and quantitative PCR.")
- (license license:gpl2+)))
-
(define-public r-xvector
(package
(name "r-xvector")
--
2.30.1
next prev parent reply other threads:[~2021-03-15 18:38 UTC|newest]
Thread overview: 24+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-03-15 18:07 [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2021-03-15 18:08 ` zimoun [this message]
2021-03-15 18:08 ` [bug#47171] [PATCH 02/10] gnu: r-xvector: Move " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 03/10] gnu: r-genomicranges: " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 04/10] gnu: r-biobase: " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 05/10] gnu: r-annotationdbi: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 06/10] gnu: r-biomart: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 07/10] gnu: r-biocparallel: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 08/10] gnu: r-biostrings: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 09/10] gnu: r-rsamtools: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 10/10] gnu: r-delayedarray: " zimoun
2021-03-15 22:33 ` bug#47171: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
2021-03-15 23:56 ` [bug#47171] " Leo Famulari
2021-03-16 12:27 ` zimoun
2021-03-16 13:20 ` Ricardo Wurmus
2021-03-16 13:30 ` zimoun
2021-03-16 16:08 ` Ricardo Wurmus
2021-03-16 16:36 ` zimoun
2021-03-16 22:04 ` Ricardo Wurmus
2021-03-17 20:15 ` zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 1/3] gnu: r-bisquerna: Move " zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 2/3] gnu: r-absfiltergsea: " zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 3/3] Revert "Revert some commits that caused `guix pull` to fail." zimoun
2021-03-31 19:29 ` bug#47171: [PATCH v2 1/3] gnu: r-bisquerna: Move to (gnu packages bioconductor) Ricardo Wurmus
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