From: zimoun <zimon.toutoune@gmail.com>
To: 47171@debbugs.gnu.org
Cc: zimoun <zimon.toutoune@gmail.com>, <rekado@elephly.net>
Subject: [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
Date: Mon, 15 Mar 2021 19:07:14 +0100 [thread overview]
Message-ID: <20210315180714.8233-1-zimon.toutoune@gmail.com> (raw)
Hi,
Janitor [1] patch set. It moves Bioconductor packages from (gnu packages
bioinformatics) to (gnu packages bioconductor). Far to be complete; still 4
pacth set like this one are coming...
1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>
To transfer the Copyright, I use:
git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>
Then, after the move, I run:
./pre-inst-env guix build r-<name> --no-grafts
./pre-inst-env guix build r-<name> --no-grafts --check
and at the end of the series, I run:
make as-derivation
to check that "guix pull" is not broken; just in case.
Last, I have not carefully checked the imported modules, so it could
be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
in gnu/packages/bioinformatics.scm.
All the best,
simon
zimoun (10):
gnu: r-limma: Move to (gnu packages bioconductor).
gnu: r-xvector: Move to (gnu packages bioconductor).
gnu: r-genomicranges: Move to (gnu packages bioconductor).
gnu: r-biobase: Move to (gnu packages bioconductor).
gnu: r-annotationdbi: Move to (gnu packages bioconductor).
gnu: r-biomart: Move to (gnu packages bioconductor).
gnu: r-biocparallel: Move to (gnu packages bioconductor).
gnu: r-biostrings: Move to (gnu packages bioconductor).
gnu: r-rsamtools: Move to (gnu packages bioconductor).
gnu: r-delayedarray: Move to (gnu packages bioconductor).
gnu/packages/bioconductor.scm | 305 ++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 305 --------------------------------
2 files changed, 305 insertions(+), 305 deletions(-)
base-commit: 266d55dc3080475544bf45e72359c9b9bbcecd53
--
2.30.1
next reply other threads:[~2021-03-15 18:48 UTC|newest]
Thread overview: 24+ messages / expand[flat|nested] mbox.gz Atom feed top
2021-03-15 18:07 zimoun [this message]
2021-03-15 18:08 ` [bug#47171] [PATCH 01/10] gnu: r-limma: Move to (gnu packages bioconductor) zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 02/10] gnu: r-xvector: " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 03/10] gnu: r-genomicranges: " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 04/10] gnu: r-biobase: " zimoun
2021-03-15 18:08 ` [bug#47171] [PATCH 05/10] gnu: r-annotationdbi: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 06/10] gnu: r-biomart: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 07/10] gnu: r-biocparallel: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 08/10] gnu: r-biostrings: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 09/10] gnu: r-rsamtools: " zimoun
2021-03-15 18:09 ` [bug#47171] [PATCH 10/10] gnu: r-delayedarray: " zimoun
2021-03-15 22:33 ` bug#47171: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
2021-03-15 23:56 ` [bug#47171] " Leo Famulari
2021-03-16 12:27 ` zimoun
2021-03-16 13:20 ` Ricardo Wurmus
2021-03-16 13:30 ` zimoun
2021-03-16 16:08 ` Ricardo Wurmus
2021-03-16 16:36 ` zimoun
2021-03-16 22:04 ` Ricardo Wurmus
2021-03-17 20:15 ` zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 1/3] gnu: r-bisquerna: Move " zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 2/3] gnu: r-absfiltergsea: " zimoun
2021-03-17 20:14 ` [bug#47171] [PATCH v2 3/3] Revert "Revert some commits that caused `guix pull` to fail." zimoun
2021-03-31 19:29 ` bug#47171: [PATCH v2 1/3] gnu: r-bisquerna: Move to (gnu packages bioconductor) Ricardo Wurmus
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