From: zimoun <zimon.toutoune@gmail.com>
To: 45399@debbugs.gnu.org
Subject: [bug#45399] [PATCH 06/10] gnu: r-erma: Move to (gnu packages bioconductor).
Date: Wed, 23 Dec 2020 19:06:31 +0100 [thread overview]
Message-ID: <20201223180635.58647-7-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20201223180635.58647-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-erma): Move from here...
* gnu/packages/bioconductor.scm (r-erma): ...to here.
---
gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 40 ---------------------------------
2 files changed, 40 insertions(+), 40 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 40a02dbe7f..466bb71101 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9241,6 +9241,46 @@ preprocessing of cytometry data, including i) normalization using bead
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
(license license:gpl2+)))
+(define-public r-erma
+ (package
+ (name "r-erma")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "erma" version))
+ (sha256
+ (base32
+ "1k2j1xhv0vwn45xmh8ds0gz812px5hnpgzvp37ngsdn4j5ai1l0k"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-homo-sapiens" ,r-homo-sapiens)
+ ("r-iranges" ,r-iranges)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shiny" ,r-shiny)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/erma")
+ (synopsis "Epigenomic road map adventures")
+ (description
+ "The epigenomics road map describes locations of epigenetic marks in DNA
+from a variety of cell types. Of interest are locations of histone
+modifications, sites of DNA methylation, and regions of accessible chromatin.
+This package presents a selection of elements of the road map including
+metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines
+by Ernst and Kellis.")
+ (license license:artistic2.0)))
+
(define-public r-gqtlstats
(package
(name "r-gqtlstats")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 25021f1ee8..1c59d7a690 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10655,46 +10655,6 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.")
several related annotation packages.")
(license license:artistic2.0)))
-(define-public r-erma
- (package
- (name "r-erma")
- (version "1.6.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "erma" version))
- (sha256
- (base32
- "1k2j1xhv0vwn45xmh8ds0gz812px5hnpgzvp37ngsdn4j5ai1l0k"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-biocparallel" ,r-biocparallel)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicfiles" ,r-genomicfiles)
- ("r-genomicranges" ,r-genomicranges)
- ("r-ggplot2" ,r-ggplot2)
- ("r-homo-sapiens" ,r-homo-sapiens)
- ("r-iranges" ,r-iranges)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)
- ("r-shiny" ,r-shiny)
- ("r-summarizedexperiment" ,r-summarizedexperiment)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/erma")
- (synopsis "Epigenomic road map adventures")
- (description
- "The epigenomics road map describes locations of epigenetic marks in DNA
-from a variety of cell types. Of interest are locations of histone
-modifications, sites of DNA methylation, and regions of accessible chromatin.
-This package presents a selection of elements of the road map including
-metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines
-by Ernst and Kellis.")
- (license license:artistic2.0)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
--
2.29.2
next prev parent reply other threads:[~2020-12-23 18:07 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-12-23 18:03 [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2020-12-23 18:06 ` zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 01/10] gnu: r-sushi: Move " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 02/10] gnu: r-gwascat: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 03/10] gnu: r-gviz: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 04/10] gnu: r-gqtlstats: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 05/10] gnu: r-ldblock: " zimoun
2020-12-23 18:06 ` zimoun [this message]
2020-12-23 18:06 ` [bug#45399] [PATCH 07/10] gnu: r-homo-sapiens: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 08/10] gnu: r-snpstats: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 09/10] gnu: r-gqtlstats: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 10/10] gnu: r-ggbio: " zimoun
2020-12-29 16:42 ` bug#45399: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
2020-12-30 9:13 ` [bug#45399] " zimoun
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