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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 23 Dec 2020 18:07:05 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45399 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45399@debbugs.gnu.org Received: via spool by 45399-submit@debbugs.gnu.org id=B45399.160874681512592 (code B ref 45399); Wed, 23 Dec 2020 18:07:05 +0000 Received: (at 45399) by debbugs.gnu.org; 23 Dec 2020 18:06:55 +0000 Received: from localhost ([127.0.0.1]:54096 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8XG-0003Gw-TW for submit@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:55 -0500 Received: from mail-wm1-f49.google.com ([209.85.128.49]:34607) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8X9-0003F8-GN for 45399@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:48 -0500 Received: by mail-wm1-f49.google.com with SMTP id g25so1817957wmh.1 for <45399@debbugs.gnu.org>; Wed, 23 Dec 2020 10:06:47 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=ae6qp1DtyoAcVjzfzeb5MyVyAI7EI7lwggTh5Zou2kY=; b=Hr5cFx45XLHhEn/ihg1osBQykCJy8G8GcMXzWcLCYdDZu4eXcY1wGGvrSRI2m+rnx6 nPlI41TOt5Expq3IWYbrkTdlNaY93xPqotWh9sSJXYllH+Lj+zQbkZmUJWfeQ1M1xczq MPcv8nzrZys9liASrTVbMfYyXWRZ6DUgTgZKwmWn0Y9dYhIU2WEInfygANpwY/R79D3J KPXktALatkKw8eqsQKs3fI7B9BNJsvl7ANwIicgxgISdFQyhnDAhlEgXIDalc1A4U07s Cx3JOxbAmfa7rnDvG3TuiviQRpRAxcHVTnn6LnHVMOQCOiYFfcZ/gDQ0WrAA5CLeMIfi u4NQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=ae6qp1DtyoAcVjzfzeb5MyVyAI7EI7lwggTh5Zou2kY=; b=RxkRvDFZsfdZODqB7KPmtnfQzSzTsDeq2FxOoKih9GC2VJ9gjBfzG9M0dmWXCj4nhe TUU3az3IuBVbhu8oksfbRgvGmr1qBJXrIo8BXHXebZ29QkzgKR4JXrFMEQ7Xqqdhba6I +nftST+j5GNNWQILnrZAZ8pf3tO5t6OAcxGQ/3ZVekeYNDvgCRA49+pjjnaJGzW9cgH7 gsWyck33UjiNOIp4oNtIEctZKiD6UeBsopY3B3z7bcT+BBCNuuR+82XMyYulK/r8vEgY UrlBt6IZ/oCoh4rXx7NiWtxxvo73ABj6GLDp+kMGbmCKalb2VOHGrfEiJWIiXj2Qplwd RWlA== X-Gm-Message-State: AOAM530hPe/15mWwL2wNddWAdfPbquS4OQmvM8wLQf4F1MB98xcRCrjv yfcqD4oaCUlKCOQyGu+VDzEHR3o44hc= X-Google-Smtp-Source: ABdhPJxAiYYIQd6BhXj12SWbaomtXmuAndSq6mgi52qBbhQ5e6yEnlnCwZF9IHHSTeDDPRsTBq1c5g== X-Received: by 2002:a1c:2646:: with SMTP id m67mr816291wmm.81.1608746801825; Wed, 23 Dec 2020 10:06:41 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id a25sm583894wmb.25.2020.12.23.10.06.41 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 10:06:41 -0800 (PST) From: zimoun Date: Wed, 23 Dec 2020 19:06:31 +0100 Message-Id: <20201223180635.58647-7-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.29.2 In-Reply-To: <20201223180635.58647-1-zimon.toutoune@gmail.com> References: <20201223180635.58647-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 2.77 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=Hr5cFx45; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 8697B9403A7 X-Spam-Score: 2.77 X-Migadu-Scanner: scn1.migadu.com X-TUID: jqxwl6Dq/Oe/ * gnu/packages/bioinformatics.scm (r-erma): Move from here... * gnu/packages/bioconductor.scm (r-erma): ...to here. --- gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 40 --------------------------------- 2 files changed, 40 insertions(+), 40 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 40a02dbe7f..466bb71101 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9241,6 +9241,46 @@ preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation.") (license license:gpl2+))) +(define-public r-erma + (package + (name "r-erma") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "erma" version)) + (sha256 + (base32 + "1k2j1xhv0vwn45xmh8ds0gz812px5hnpgzvp37ngsdn4j5ai1l0k")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfiles" ,r-genomicfiles) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-homo-sapiens" ,r-homo-sapiens) + ("r-iranges" ,r-iranges) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-shiny" ,r-shiny) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/erma") + (synopsis "Epigenomic road map adventures") + (description + "The epigenomics road map describes locations of epigenetic marks in DNA +from a variety of cell types. Of interest are locations of histone +modifications, sites of DNA methylation, and regions of accessible chromatin. +This package presents a selection of elements of the road map including +metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines +by Ernst and Kellis.") + (license license:artistic2.0))) + (define-public r-gqtlstats (package (name "r-gqtlstats") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 25021f1ee8..1c59d7a690 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10655,46 +10655,6 @@ the earlier snpMatrix package, allowing for uncertainty in genotypes.") several related annotation packages.") (license license:artistic2.0))) -(define-public r-erma - (package - (name "r-erma") - (version "1.6.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "erma" version)) - (sha256 - (base32 - "1k2j1xhv0vwn45xmh8ds0gz812px5hnpgzvp37ngsdn4j5ai1l0k")))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-biocparallel" ,r-biocparallel) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicfiles" ,r-genomicfiles) - ("r-genomicranges" ,r-genomicranges) - ("r-ggplot2" ,r-ggplot2) - ("r-homo-sapiens" ,r-homo-sapiens) - ("r-iranges" ,r-iranges) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-shiny" ,r-shiny) - ("r-summarizedexperiment" ,r-summarizedexperiment))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/erma") - (synopsis "Epigenomic road map adventures") - (description - "The epigenomics road map describes locations of epigenetic marks in DNA -from a variety of cell types. Of interest are locations of histone -modifications, sites of DNA methylation, and regions of accessible chromatin. -This package presents a selection of elements of the road map including -metadata and outputs of the ChromImpute procedure applied to ENCODE cell lines -by Ernst and Kellis.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.29.2