unofficial mirror of guix-patches@gnu.org 
 help / color / mirror / code / Atom feed
From: zimoun <zimon.toutoune@gmail.com>
To: 45399@debbugs.gnu.org
Subject: [bug#45399] [PATCH 01/10] gnu: r-sushi: Move to (gnu packages bioconductor).
Date: Wed, 23 Dec 2020 19:06:26 +0100	[thread overview]
Message-ID: <20201223180635.58647-2-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20201223180635.58647-1-zimon.toutoune@gmail.com>

* gnu/packages/bioinformatics.scm (r-sushi): Move from here...
* gnu/packages/bioconductor.scm (r-sushi): ...to here.
---
 gnu/packages/bioconductor.scm   | 22 ++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 22 ----------------------
 2 files changed, 22 insertions(+), 22 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 33f66ce8be..3dd34e7f24 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9300,3 +9300,25 @@ graph with the mapped data.  In addition, @code{r-pathview} also seamlessly
 integrates with pathway and gene set (enrichment) analysis tools for
 large-scale and fully automated analysis.")
     (license license:gpl3+)))
+
+(define-public r-sushi
+  (package
+    (name "r-sushi")
+    (version "1.28.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "Sushi" version))
+              (sha256
+               (base32
+                "0ksj4f9z14mjsv6ssg5dwhpldw4r7wpdsln2if5g486mm1c56r8p"))))
+    (properties `((upstream-name . "Sushi")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biomart" ,r-biomart)
+       ("r-zoo" ,r-zoo)))
+    (home-page "https://bioconductor.org/packages/Sushi")
+    (synopsis "Tools for visualizing genomics data")
+    (description
+     "This package provides flexible, quantitative, and integrative genomic
+visualizations for publication-quality multi-panel figures.")
+    (license license:gpl2+)))
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 96fa22f1a3..6ef93d9b62 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10867,28 +10867,6 @@ with your data.")
 EMBL-EBI GWAS catalog.")
     (license license:artistic2.0)))
 
-(define-public r-sushi
-  (package
-    (name "r-sushi")
-    (version "1.28.0")
-    (source (origin
-              (method url-fetch)
-              (uri (bioconductor-uri "Sushi" version))
-              (sha256
-               (base32
-                "0ksj4f9z14mjsv6ssg5dwhpldw4r7wpdsln2if5g486mm1c56r8p"))))
-    (properties `((upstream-name . "Sushi")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-biomart" ,r-biomart)
-       ("r-zoo" ,r-zoo)))
-    (home-page "https://bioconductor.org/packages/Sushi")
-    (synopsis "Tools for visualizing genomics data")
-    (description
-     "This package provides flexible, quantitative, and integrative genomic
-visualizations for publication-quality multi-panel figures.")
-    (license license:gpl2+)))
-
 (define-public r-dropbead
   (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
         (revision "2"))
-- 
2.29.2





  reply	other threads:[~2020-12-23 18:07 UTC|newest]

Thread overview: 14+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2020-12-23 18:03 [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2020-12-23 18:06 ` zimoun
2020-12-23 18:06   ` zimoun [this message]
2020-12-23 18:06   ` [bug#45399] [PATCH 02/10] gnu: r-gwascat: Move " zimoun
2020-12-23 18:06   ` [bug#45399] [PATCH 03/10] gnu: r-gviz: " zimoun
2020-12-23 18:06   ` [bug#45399] [PATCH 04/10] gnu: r-gqtlstats: " zimoun
2020-12-23 18:06   ` [bug#45399] [PATCH 05/10] gnu: r-ldblock: " zimoun
2020-12-23 18:06   ` [bug#45399] [PATCH 06/10] gnu: r-erma: " zimoun
2020-12-23 18:06   ` [bug#45399] [PATCH 07/10] gnu: r-homo-sapiens: " zimoun
2020-12-23 18:06   ` [bug#45399] [PATCH 08/10] gnu: r-snpstats: " zimoun
2020-12-23 18:06   ` [bug#45399] [PATCH 09/10] gnu: r-gqtlstats: " zimoun
2020-12-23 18:06   ` [bug#45399] [PATCH 10/10] gnu: r-ggbio: " zimoun
2020-12-29 16:42 ` bug#45399: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
2020-12-30  9:13   ` [bug#45399] " zimoun

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20201223180635.58647-2-zimon.toutoune@gmail.com \
    --to=zimon.toutoune@gmail.com \
    --cc=45399@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).