From: zimoun <zimon.toutoune@gmail.com>
To: 45399@debbugs.gnu.org
Subject: [bug#45399] [PATCH 01/10] gnu: r-sushi: Move to (gnu packages bioconductor).
Date: Wed, 23 Dec 2020 19:06:26 +0100 [thread overview]
Message-ID: <20201223180635.58647-2-zimon.toutoune@gmail.com> (raw)
In-Reply-To: <20201223180635.58647-1-zimon.toutoune@gmail.com>
* gnu/packages/bioinformatics.scm (r-sushi): Move from here...
* gnu/packages/bioconductor.scm (r-sushi): ...to here.
---
gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 22 ----------------------
2 files changed, 22 insertions(+), 22 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 33f66ce8be..3dd34e7f24 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9300,3 +9300,25 @@ graph with the mapped data. In addition, @code{r-pathview} also seamlessly
integrates with pathway and gene set (enrichment) analysis tools for
large-scale and fully automated analysis.")
(license license:gpl3+)))
+
+(define-public r-sushi
+ (package
+ (name "r-sushi")
+ (version "1.28.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Sushi" version))
+ (sha256
+ (base32
+ "0ksj4f9z14mjsv6ssg5dwhpldw4r7wpdsln2if5g486mm1c56r8p"))))
+ (properties `((upstream-name . "Sushi")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biomart" ,r-biomart)
+ ("r-zoo" ,r-zoo)))
+ (home-page "https://bioconductor.org/packages/Sushi")
+ (synopsis "Tools for visualizing genomics data")
+ (description
+ "This package provides flexible, quantitative, and integrative genomic
+visualizations for publication-quality multi-panel figures.")
+ (license license:gpl2+)))
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 96fa22f1a3..6ef93d9b62 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10867,28 +10867,6 @@ with your data.")
EMBL-EBI GWAS catalog.")
(license license:artistic2.0)))
-(define-public r-sushi
- (package
- (name "r-sushi")
- (version "1.28.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "Sushi" version))
- (sha256
- (base32
- "0ksj4f9z14mjsv6ssg5dwhpldw4r7wpdsln2if5g486mm1c56r8p"))))
- (properties `((upstream-name . "Sushi")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biomart" ,r-biomart)
- ("r-zoo" ,r-zoo)))
- (home-page "https://bioconductor.org/packages/Sushi")
- (synopsis "Tools for visualizing genomics data")
- (description
- "This package provides flexible, quantitative, and integrative genomic
-visualizations for publication-quality multi-panel figures.")
- (license license:gpl2+)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
--
2.29.2
next prev parent reply other threads:[~2020-12-23 18:07 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-12-23 18:03 [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor) zimoun
2020-12-23 18:06 ` zimoun
2020-12-23 18:06 ` zimoun [this message]
2020-12-23 18:06 ` [bug#45399] [PATCH 02/10] gnu: r-gwascat: Move " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 03/10] gnu: r-gviz: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 04/10] gnu: r-gqtlstats: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 05/10] gnu: r-ldblock: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 06/10] gnu: r-erma: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 07/10] gnu: r-homo-sapiens: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 08/10] gnu: r-snpstats: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 09/10] gnu: r-gqtlstats: " zimoun
2020-12-23 18:06 ` [bug#45399] [PATCH 10/10] gnu: r-ggbio: " zimoun
2020-12-29 16:42 ` bug#45399: [PATCH 00/10] Move some Bioconductor packages " Ricardo Wurmus
2020-12-30 9:13 ` [bug#45399] " zimoun
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