From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id iFzAGVaH419UHgAA0tVLHw (envelope-from ) for ; Wed, 23 Dec 2020 18:07:18 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id iB6PFVaH41/6eQAAbx9fmQ (envelope-from ) for ; Wed, 23 Dec 2020 18:07:18 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 1AC869403A7 for ; Wed, 23 Dec 2020 18:07:18 +0000 (UTC) Received: from localhost ([::1]:40468 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1ks8Xc-0002Np-TN for larch@yhetil.org; Wed, 23 Dec 2020 13:07:16 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:56860) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ks8XO-0002Nc-S5 for guix-patches@gnu.org; Wed, 23 Dec 2020 13:07:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:42558) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1ks8XO-0001PP-KG for guix-patches@gnu.org; Wed, 23 Dec 2020 13:07:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1ks8XO-0003Hr-E9 for guix-patches@gnu.org; Wed, 23 Dec 2020 13:07:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45399] [PATCH 01/10] gnu: r-sushi: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 23 Dec 2020 18:07:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 45399 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45399@debbugs.gnu.org Received: via spool by 45399-submit@debbugs.gnu.org id=B45399.160874680612505 (code B ref 45399); Wed, 23 Dec 2020 18:07:02 +0000 Received: (at 45399) by debbugs.gnu.org; 23 Dec 2020 18:06:46 +0000 Received: from localhost ([127.0.0.1]:54077 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8X7-0003FR-Oh for submit@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:46 -0500 Received: from mail-wr1-f52.google.com ([209.85.221.52]:34286) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ks8X6-0003Ey-DB for 45399@debbugs.gnu.org; Wed, 23 Dec 2020 13:06:44 -0500 Received: by mail-wr1-f52.google.com with SMTP id q18so86798wrn.1 for <45399@debbugs.gnu.org>; Wed, 23 Dec 2020 10:06:44 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=Hn2j79csnCCVkNW9aAShcYd0i2dYpBduKK6LIydG+aY=; b=dA1NNgN2yzxg0XmFJkMscm0B/JfhFmryTBdOLu+2YTYAqrnfwFYvNSr2DTiJJlGpZe m+cEW8a14C4tuvR2YHg/PAUv5c1Bz3LqKbyj4shsi3kOy+RLMjg47TpmnTa5EGw2qeC3 TSin+qqB51+2gC2t6waCAzEiJkajcYSB0BEz78+tAU203SHgtqBBMbF61pAKR2WH0IPW xyO5/KpnNkPVfdbDhpxHeMu00BCf49W5NVEMrCaORGthSWTY+mx+WlT0GZphx2cebFAv I8BIUxjf+mz+S0CH+BJ5NV60a6q2eBixF6zgTndLq2XXH8F9/J6quAaU8B6yX5Vdg2fG ky4A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=Hn2j79csnCCVkNW9aAShcYd0i2dYpBduKK6LIydG+aY=; b=OqcRDom3JnLAmiZBjR2bUq67dooLUqmDOs8agykMyEoouzadKqim7MXeqasg5nLKzb pmIBDxxrBhhj4D1or24K/B6P4C/fuHDK+XpEmgUM4ejQwoPRj7zF/5hByE0t5LSwM6Xs J2utRd8fG+8BcU8INkLhD9HibelXuCbgpOuerCi5VBH8eAXEoL/OysqZjFnfI94OVGo+ KHQgiM605kzezVT4G/30Rak3sHz/vNFnqJPZy1YxavDPd/t6oEyzBh6xM/ZJ6aLdwMML SHMEovuXpKnXm0ipWJmbxXeeq6miscrGE1n5YhvktOWC4VE29rcMIJhuDq7dglpRflxa g3kQ== X-Gm-Message-State: AOAM531wKwVaZ0In6kzTdwyYz+1Rm/zBMXQW8UeTG2XUJXxdGlClWDPh 3Mkj6u6w6dPerAEDVcmnkghhY31wPk4= X-Google-Smtp-Source: ABdhPJzI6D2nph714LSZf/4HFUwXtotX4WgO2vCAUcASe16Ss7k4wVuBBl5Fgr76ULFl0QQI9auXXQ== X-Received: by 2002:adf:f891:: with SMTP id u17mr30958273wrp.253.1608746798914; Wed, 23 Dec 2020 10:06:38 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id a25sm583894wmb.25.2020.12.23.10.06.38 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 23 Dec 2020 10:06:38 -0800 (PST) From: zimoun Date: Wed, 23 Dec 2020 19:06:26 +0100 Message-Id: <20201223180635.58647-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.29.2 In-Reply-To: <20201223180635.58647-1-zimon.toutoune@gmail.com> References: <20201223180635.58647-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+larch=yhetil.org@gnu.org Sender: "Guix-patches" X-Migadu-Flow: FLOW_IN X-Migadu-Spam-Score: 2.77 Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=dA1NNgN2; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of guix-patches-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-patches-bounces@gnu.org X-Migadu-Queue-Id: 1AC869403A7 X-Spam-Score: 2.77 X-Migadu-Scanner: scn1.migadu.com X-TUID: hCraprk3u43j * gnu/packages/bioinformatics.scm (r-sushi): Move from here... * gnu/packages/bioconductor.scm (r-sushi): ...to here. --- gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 22 ---------------------- 2 files changed, 22 insertions(+), 22 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 33f66ce8be..3dd34e7f24 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9300,3 +9300,25 @@ graph with the mapped data. In addition, @code{r-pathview} also seamlessly integrates with pathway and gene set (enrichment) analysis tools for large-scale and fully automated analysis.") (license license:gpl3+))) + +(define-public r-sushi + (package + (name "r-sushi") + (version "1.28.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Sushi" version)) + (sha256 + (base32 + "0ksj4f9z14mjsv6ssg5dwhpldw4r7wpdsln2if5g486mm1c56r8p")))) + (properties `((upstream-name . "Sushi"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biomart" ,r-biomart) + ("r-zoo" ,r-zoo))) + (home-page "https://bioconductor.org/packages/Sushi") + (synopsis "Tools for visualizing genomics data") + (description + "This package provides flexible, quantitative, and integrative genomic +visualizations for publication-quality multi-panel figures.") + (license license:gpl2+))) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 96fa22f1a3..6ef93d9b62 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10867,28 +10867,6 @@ with your data.") EMBL-EBI GWAS catalog.") (license license:artistic2.0))) -(define-public r-sushi - (package - (name "r-sushi") - (version "1.28.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "Sushi" version)) - (sha256 - (base32 - "0ksj4f9z14mjsv6ssg5dwhpldw4r7wpdsln2if5g486mm1c56r8p")))) - (properties `((upstream-name . "Sushi"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biomart" ,r-biomart) - ("r-zoo" ,r-zoo))) - (home-page "https://bioconductor.org/packages/Sushi") - (synopsis "Tools for visualizing genomics data") - (description - "This package provides flexible, quantitative, and integrative genomic -visualizations for publication-quality multi-panel figures.") - (license license:gpl2+))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) -- 2.29.2