From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: 32642@debbugs.gnu.org
Cc: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Subject: [bug#32642] [PATCH 16/16] gnu: Add python-pygenometracks.
Date: Wed, 5 Sep 2018 16:07:28 +0200 [thread overview]
Message-ID: <20180905140728.11138-2-ricardo.wurmus@mdc-berlin.de> (raw)
In-Reply-To: <20180905140728.11138-1-ricardo.wurmus@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ccc3ed26a..97e8e1b07 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13715,3 +13715,34 @@ the visualization of multiple contact matrices along with other types of data
like genes, compartments, ChIP-seq coverage tracks (and in general any type of
genomic scores), long range contacts and the visualization of viewpoints.")
(license license:gpl3)))
+
+(define-public python-pygenometracks
+ (package
+ (name "python-pygenometracks")
+ (version "2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyGenomeTracks" version))
+ (sha256
+ (base32
+ "1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-configparser" ,python-configparser)
+ ("python-future" ,python-future)
+ ("python-hicexplorer" ,python-hicexplorer)
+ ("python-intervaltree" ,python-intervaltree)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-numpy" ,python-numpy)
+ ("python-pybigwig" ,python-pybigwig)))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (home-page "https://pygenometracks.readthedocs.io")
+ (synopsis "Program and library to plot beautiful genome browser tracks")
+ (description
+ "This package aims to produce high-quality genome browser tracks that
+are highly customizable. Currently, it is possible to plot: bigwig, bed (many
+options), bedgraph, links (represented as arcs), and Hi-C matrices.
+pyGenomeTracks can make plots with or without Hi-C data.")
+ (license license:gpl3+)))
--
2.18.0
next prev parent reply other threads:[~2018-09-05 14:08 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-09-05 13:46 [bug#32642] [PATCH 00/16] gnu: Add python-pygenometracks Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 01/16] gnu: Add python-dill Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 02/16] gnu: Add python-multiprocess Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 03/16] gnu: Add python-toolz Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 04/16] gnu: Add python-cytoolz Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 05/16] gnu: Add python-sortedcontainers Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 06/16] gnu: Add python-cloudpickle Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 07/16] gnu: Add python-locket Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 08/16] gnu: Add python-blosc Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 09/16] gnu: Add python-partd Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 10/16] gnu: Add python-dask Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 11/16] gnu: Add python-intervaltree Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 12/16] gnu: Add python-pypairix Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 14/16] gnu: Add python-cooler Ricardo Wurmus
2018-09-05 14:07 ` [bug#32642] [PATCH 15/16] gnu: Add python-hicexplorer Ricardo Wurmus
2018-09-05 14:07 ` Ricardo Wurmus [this message]
2018-09-10 14:52 ` bug#32642: [PATCH 16/16] gnu: Add python-pygenometracks Ricardo Wurmus
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