From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from eggs.gnu.org ([2001:4830:134:3::10]:57662) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1fxYTW-0006PW-D0 for guix-patches@gnu.org; Wed, 05 Sep 2018 10:08:07 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1fxYTT-0004Zm-92 for guix-patches@gnu.org; Wed, 05 Sep 2018 10:08:06 -0400 Received: from debbugs.gnu.org ([208.118.235.43]:42284) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1fxYTT-0004Z1-4K for guix-patches@gnu.org; Wed, 05 Sep 2018 10:08:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1fxYTS-0005MC-U5 for guix-patches@gnu.org; Wed, 05 Sep 2018 10:08:02 -0400 Subject: [bug#32642] [PATCH 16/16] gnu: Add python-pygenometracks. Resent-Message-ID: From: Ricardo Wurmus Date: Wed, 5 Sep 2018 16:07:28 +0200 Message-ID: <20180905140728.11138-2-ricardo.wurmus@mdc-berlin.de> In-Reply-To: <20180905140728.11138-1-ricardo.wurmus@mdc-berlin.de> References: <20180905140006.10783-9-ricardo.wurmus@mdc-berlin.de> <20180905140728.11138-1-ricardo.wurmus@mdc-berlin.de> MIME-Version: 1.0 Content-Type: text/plain List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+kyle=kyleam.com@gnu.org Sender: "Guix-patches" To: 32642@debbugs.gnu.org Cc: Ricardo Wurmus * gnu/packages/bioinformatics.scm (python-pygenometracks): New variable. --- gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ccc3ed26a..97e8e1b07 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13715,3 +13715,34 @@ the visualization of multiple contact matrices along with other types of data like genes, compartments, ChIP-seq coverage tracks (and in general any type of genomic scores), long range contacts and the visualization of viewpoints.") (license license:gpl3))) + +(define-public python-pygenometracks + (package + (name "python-pygenometracks") + (version "2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyGenomeTracks" version)) + (sha256 + (base32 + "1fws6bqsyy9kj3qiabhkqx4wd4i775gsxnhszqd3zg7w67sc1ic5")))) + (build-system python-build-system) + (propagated-inputs + `(("python-configparser" ,python-configparser) + ("python-future" ,python-future) + ("python-hicexplorer" ,python-hicexplorer) + ("python-intervaltree" ,python-intervaltree) + ("python-matplotlib" ,python-matplotlib) + ("python-numpy" ,python-numpy) + ("python-pybigwig" ,python-pybigwig))) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://pygenometracks.readthedocs.io") + (synopsis "Program and library to plot beautiful genome browser tracks") + (description + "This package aims to produce high-quality genome browser tracks that +are highly customizable. Currently, it is possible to plot: bigwig, bed (many +options), bedgraph, links (represented as arcs), and Hi-C matrices. +pyGenomeTracks can make plots with or without Hi-C data.") + (license license:gpl3+))) -- 2.18.0