From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: 32642@debbugs.gnu.org
Cc: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Subject: [bug#32642] [PATCH 11/16] gnu: Add python-intervaltree.
Date: Wed, 5 Sep 2018 16:00:01 +0200 [thread overview]
Message-ID: <20180905140006.10783-6-ricardo.wurmus@mdc-berlin.de> (raw)
In-Reply-To: <20180905140006.10783-1-ricardo.wurmus@mdc-berlin.de>
* gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 05d516165..963715b43 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13551,3 +13551,31 @@ reference transcripts provided in a annotation file (also in GTF/GFF3 format).
(list
license:expat ;license for gffcompare
license:artistic2.0))))) ;license for gclib
+
+(define-public python-intervaltree
+ (package
+ (name "python-intervaltree")
+ (version "2.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "intervaltree" version))
+ (sha256
+ (base32
+ "02w191m9zxkcjqr1kv2slxvhymwhj3jnsyy3a28b837pi15q19dc"))))
+ (build-system python-build-system)
+ ;; FIXME: error when collecting tests
+ (arguments '(#:tests? #f))
+ (propagated-inputs
+ `(("python-sortedcontainers" ,python-sortedcontainers)))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (home-page "https://github.com/chaimleib/intervaltree")
+ (synopsis "Editable interval tree data structure")
+ (description
+ "This package provides a mutable, self-balancing interval tree
+implementation for Python. Queries may be by point, by range overlap, or by
+range envelopment. This library was designed to allow tagging text and time
+intervals, where the intervals include the lower bound but not the upper
+bound.")
+ (license license:asl2.0)))
--
2.18.0
next prev parent reply other threads:[~2018-09-05 14:01 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2018-09-05 13:46 [bug#32642] [PATCH 00/16] gnu: Add python-pygenometracks Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 01/16] gnu: Add python-dill Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 02/16] gnu: Add python-multiprocess Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 03/16] gnu: Add python-toolz Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 04/16] gnu: Add python-cytoolz Ricardo Wurmus
2018-09-05 13:54 ` [bug#32642] [PATCH 05/16] gnu: Add python-sortedcontainers Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 06/16] gnu: Add python-cloudpickle Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 07/16] gnu: Add python-locket Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 08/16] gnu: Add python-blosc Ricardo Wurmus
2018-09-05 13:59 ` [bug#32642] [PATCH 09/16] gnu: Add python-partd Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 10/16] gnu: Add python-dask Ricardo Wurmus
2018-09-05 14:00 ` Ricardo Wurmus [this message]
2018-09-05 14:00 ` [bug#32642] [PATCH 12/16] gnu: Add python-pypairix Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx Ricardo Wurmus
2018-09-05 14:00 ` [bug#32642] [PATCH 14/16] gnu: Add python-cooler Ricardo Wurmus
2018-09-05 14:07 ` [bug#32642] [PATCH 15/16] gnu: Add python-hicexplorer Ricardo Wurmus
2018-09-05 14:07 ` [bug#32642] [PATCH 16/16] gnu: Add python-pygenometracks Ricardo Wurmus
2018-09-10 14:52 ` bug#32642: " Ricardo Wurmus
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