From: Ricardo Wurmus <rekado@elephly.net>
To: 26373@debbugs.gnu.org
Cc: Ricardo Wurmus <rekado@elephly.net>
Subject: bug#26373: [PATCH 2/6] import cran: Add predicate for Bioconductor experiment packages.
Date: Wed, 5 Apr 2017 18:42:06 +0200 [thread overview]
Message-ID: <20170405164210.29428-2-rekado@elephly.net> (raw)
In-Reply-To: <20170405164210.29428-1-rekado@elephly.net>
* guix/import/cran.scm (bioconductor-experiment-package?): New variable.
---
guix/import/cran.scm | 13 +++++++++++++
1 file changed, 13 insertions(+)
diff --git a/guix/import/cran.scm b/guix/import/cran.scm
index f63d23972..48ab7355d 100644
--- a/guix/import/cran.scm
+++ b/guix/import/cran.scm
@@ -453,6 +453,19 @@ dependencies."
(any predicate uris))
(_ #f)))))
+(define (bioconductor-experiment-package? package)
+ "Return true if PACKAGE is an R experiment package from Bioconductor."
+ (let ((predicate (lambda (uri)
+ (and (string-prefix? "http://bioconductor.org" uri)
+ (string-contains uri "/data/experiment/")))))
+ (and (string-prefix? "r-" (package-name package))
+ (match (and=> (package-source package) origin-uri)
+ ((? string? uri)
+ (predicate uri))
+ ((? list? uris)
+ (any predicate uris))
+ (_ #f)))))
+
(define %cran-updater
(upstream-updater
(name 'cran)
--
2.12.2
next prev parent reply other threads:[~2017-04-05 16:43 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2017-04-05 16:40 bug#26373: Various improvements to the CRAN importer Ricardo Wurmus
2017-04-05 16:42 ` bug#26373: [PATCH 1/6] import cran: Exclude experiment packages in predicate "bioconductor-package?" Ricardo Wurmus
2017-04-05 16:42 ` Ricardo Wurmus [this message]
2017-04-10 9:51 ` bug#26373: [PATCH 2/6] import cran: Add predicate for Bioconductor experiment packages Ludovic Courtès
2017-04-10 13:50 ` Ricardo Wurmus
2017-04-10 21:34 ` Ludovic Courtès
2017-04-05 16:42 ` bug#26373: [PATCH 3/6] import cran: Refactor "needs-zlib?" Ricardo Wurmus
2017-04-10 9:52 ` Ludovic Courtès
2017-04-05 16:42 ` bug#26373: [PATCH 4/6] import cran: Check if pkg-config is needed Ricardo Wurmus
2017-04-10 9:52 ` Ludovic Courtès
2017-04-05 16:42 ` bug#26373: [PATCH 5/6] import cran: Ensure substring indices are valid Ricardo Wurmus
2017-04-10 9:52 ` Ludovic Courtès
2017-04-05 16:42 ` bug#26373: [PATCH 6/6] import cran: Skip updating when meta data cannot be downloaded Ricardo Wurmus
2017-04-10 9:55 ` Ludovic Courtès
2017-04-10 13:55 ` Ricardo Wurmus
2017-04-10 21:37 ` Ludovic Courtès
2017-05-16 19:48 ` Ricardo Wurmus
2017-04-10 9:50 ` bug#26373: [PATCH 1/6] import cran: Exclude experiment packages in predicate "bioconductor-package?" Ludovic Courtès
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=20170405164210.29428-2-rekado@elephly.net \
--to=rekado@elephly.net \
--cc=26373@debbugs.gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).